Package: RMAGEML

Version: 2.6.0

Command: D:\biocbld\1.8d\R\bin\R.exe CMD build RMAGEML

RetCode: 1

Time: 3.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'RMAGEML/DESCRIPTION' ... OK
* preparing 'RMAGEML':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/1.8d/tmpdir/Rinst806004287


---------- Making package RMAGEML ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  making DLL ...
making rmageml.d from rmageml.c
gcc  -IC:/progra~1/java/jdk1.5.0_01/include -IC:/progra~1/java/jdk1.5.0_01/include/win32 -Id:/biocbld/1.8d/R/include -Wall -O2   -c rmageml.c -o rmageml.o
rmageml.c:7:17: jni.h: No such file or directory
rmageml.c: In function `arji_createJVM':
rmageml.c:45: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:45: error: (Each undeclared identifier is reported only once
rmageml.c:45: error: for each function it appears in.)
rmageml.c:45: error: `env' undeclared (first use in this function)
rmageml.c:46: error: `JavaVM' undeclared (first use in this function)
rmageml.c:46: error: `jvm' undeclared (first use in this function)
rmageml.c:47: error: `jint' undeclared (first use in this function)
rmageml.c:47: error: syntax error before "res"
rmageml.c:49: error: `JavaVMInitArgs' undeclared (first use in this function)
rmageml.c:49: error: syntax error before "vm_args"
rmageml.c:50: error: `JavaVMOption' undeclared (first use in this function)
rmageml.c:53: error: `options' undeclared (first use in this function)
rmageml.c:55: error: `vm_args' undeclared (first use in this function)
rmageml.c:58: error: `JNI_TRUE' undeclared (first use in this function)
rmageml.c:61: error: `res' undeclared (first use in this function)
rmageml.c:61: warning: implicit declaration of function `JNI_CreateJavaVM'
rmageml.c: In function `arji_destroyJavaVM':
rmageml.c:74: error: `JavaVM' undeclared (first use in this function)
rmageml.c:74: error: `thisjvm' undeclared (first use in this function)
rmageml.c:75: error: syntax error before ')' token
rmageml.c:76: error: syntax error before ')' token
rmageml.c: In function `destroyOM':
rmageml.c:82: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:82: error: `env' undeclared (first use in this function)
rmageml.c:83: error: `JavaVM' undeclared (first use in this function)
rmageml.c:83: error: `jvm' undeclared (first use in this function)
rmageml.c:84: error: `jobject' undeclared (first use in this function)
rmageml.c:84: error: syntax error before "rmagestk"
rmageml.c:86: error: syntax error before ')' token
rmageml.c:87: error: syntax error before ')' token
rmageml.c:88: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:89: error: `rmagestk' undeclared (first use in this function)
rmageml.c:89: error: syntax error before "R_ExternalPtrAddr"
rmageml.c: In function `newRMAGESTK':
rmageml.c:94: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:94: error: `env' undeclared (first use in this function)
rmageml.c:95: error: `JavaVM' undeclared (first use in this function)
rmageml.c:95: error: `jvm' undeclared (first use in this function)
rmageml.c:96: error: `jclass' undeclared (first use in this function)
rmageml.c:96: error: syntax error before "cls"
rmageml.c:97: error: `jobject' undeclared (first use in this function)
rmageml.c:99: error: `jmethodID' undeclared (first use in this function)
rmageml.c:99: error: syntax error before "mid"
rmageml.c:100: error: `jstring' undeclared (first use in this function)
rmageml.c:103: error: syntax error before ')' token
rmageml.c:104: error: syntax error before ')' token
rmageml.c:105: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:108: error: `cls' undeclared (first use in this function)
rmageml.c:109: error: `mid' undeclared (first use in this function)
rmageml.c:110: error: `jstr' undeclared (first use in this function)
rmageml.c:111: error: `rmagestk' undeclared (first use in this function)
rmageml.c: In function `importFeatures':
rmageml.c:118: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:118: error: `env' undeclared (first use in this function)
rmageml.c:119: error: `JavaVM' undeclared (first use in this function)
rmageml.c:119: error: `jvm' undeclared (first use in this function)
rmageml.c:120: error: `jclass' undeclared (first use in this function)
rmageml.c:120: error: syntax error before "cls"
rmageml.c:121: error: `jobject' undeclared (first use in this function)
rmageml.c:122: error: `jmethodID' undeclared (first use in this function)
rmageml.c:123: error: `jstring' undeclared (first use in this function)
rmageml.c:128: error: syntax error before ')' token
rmageml.c:129: error: syntax error before ')' token
rmageml.c:130: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:132: error: `rmagestk' undeclared (first use in this function)
rmageml.c:132: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:134: error: `cls' undeclared (first use in this function)
rmageml.c:135: error: `mid' undeclared (first use in this function)
rmageml.c:136: error: `jpackage' undeclared (first use in this function)
rmageml.c:137: error: `jarrayID' undeclared (first use in this function)
rmageml.c:138: error: `jDED' undeclared (first use in this function)
rmageml.c:139: error: `jdb' undeclared (first use in this function)
rmageml.c: In function `getGridDimensions':
rmageml.c:151: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:151: error: `env' undeclared (first use in this function)
rmageml.c:152: error: `JavaVM' undeclared (first use in this function)
rmageml.c:152: error: `jvm' undeclared (first use in this function)
rmageml.c:153: error: `jclass' undeclared (first use in this function)
rmageml.c:153: error: syntax error before "cls"
rmageml.c:154: error: `jobject' undeclared (first use in this function)
rmageml.c:155: error: `jmethodID' undeclared (first use in this function)
rmageml.c:156: error: `jintArray' undeclared (first use in this function)
rmageml.c:157: error: `jstring' undeclared (first use in this function)
rmageml.c:159: error: `jint' undeclared (first use in this function)
rmageml.c:163: error: syntax error before ')' token
rmageml.c:164: error: syntax error before ')' token
rmageml.c:165: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:167: error: `rmagestk' undeclared (first use in this function)
rmageml.c:167: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:169: error: `cls' undeclared (first use in this function)
rmageml.c:170: error: `mid' undeclared (first use in this function)
rmageml.c:172: error: `jarrayID' undeclared (first use in this function)
rmageml.c:173: error: `jDED' undeclared (first use in this function)
rmageml.c:175: error: `result' undeclared (first use in this function)
rmageml.c:179: error: syntax error before "buf"
rmageml.c:181: error: `buf' undeclared (first use in this function)
rmageml.c:185: error: `i' undeclared (first use in this function)
rmageml.c: In function `selectQTypesDeriv':
rmageml.c:195: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:195: error: `env' undeclared (first use in this function)
rmageml.c:196: error: `JavaVM' undeclared (first use in this function)
rmageml.c:196: error: `jvm' undeclared (first use in this function)
rmageml.c:197: error: `jclass' undeclared (first use in this function)
rmageml.c:197: error: syntax error before "cls"
rmageml.c:198: error: `jobject' undeclared (first use in this function)
rmageml.c:199: error: `jmethodID' undeclared (first use in this function)
rmageml.c:200: error: `jintArray' undeclared (first use in this function)
rmageml.c:201: error: `jstring' undeclared (first use in this function)
rmageml.c:205: error: syntax error before ')' token
rmageml.c:206: error: syntax error before ')' token
rmageml.c:207: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:209: error: `rmagestk' undeclared (first use in this function)
rmageml.c:209: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:210: error: `cls' undeclared (first use in this function)
rmageml.c:211: error: `mid' undeclared (first use in this function)
rmageml.c:212: error: `jQTD' undeclared (first use in this function)
rmageml.c:213: error: `jderiv' undeclared (first use in this function)
rmageml.c:215: error: `result' undeclared (first use in this function)
rmageml.c:216: error: `jint' undeclared (first use in this function)
rmageml.c:216: error: syntax error before "buf"
rmageml.c:218: error: `buf' undeclared (first use in this function)
rmageml.c: In function `getSizeDED':
rmageml.c:229: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:229: error: `env' undeclared (first use in this function)
rmageml.c:230: error: `JavaVM' undeclared (first use in this function)
rmageml.c:230: error: `jvm' undeclared (first use in this function)
rmageml.c:231: error: `jclass' undeclared (first use in this function)
rmageml.c:231: error: syntax error before "cls"
rmageml.c:232: error: `jobject' undeclared (first use in this function)
rmageml.c:233: error: `jmethodID' undeclared (first use in this function)
rmageml.c:234: error: `jintArray' undeclared (first use in this function)
rmageml.c:235: error: `jstring' undeclared (first use in this function)
rmageml.c:239: error: syntax error before ')' token
rmageml.c:240: error: syntax error before ')' token
rmageml.c:241: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:243: error: `rmagestk' undeclared (first use in this function)
rmageml.c:243: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:246: error: `cls' undeclared (first use in this function)
rmageml.c:252: error: `mid' undeclared (first use in this function)
rmageml.c:258: error: `jDED' undeclared (first use in this function)
rmageml.c:260: error: `result' undeclared (first use in this function)
rmageml.c:262: error: `jint' undeclared (first use in this function)
rmageml.c:262: error: syntax error before "buf"
rmageml.c:264: error: `buf' undeclared (first use in this function)
rmageml.c: In function `selectQTypes':
rmageml.c:275: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:275: error: `env' undeclared (first use in this function)
rmageml.c:276: error: `JavaVM' undeclared (first use in this function)
rmageml.c:276: error: `jvm' undeclared (first use in this function)
rmageml.c:277: error: `jclass' undeclared (first use in this function)
rmageml.c:277: error: syntax error before "cls"
rmageml.c:278: error: `jobject' undeclared (first use in this function)
rmageml.c:279: error: `jmethodID' undeclared (first use in this function)
rmageml.c:280: error: `jintArray' undeclared (first use in this function)
rmageml.c:281: error: `jstring' undeclared (first use in this function)
rmageml.c:286: error: `jint' undeclared (first use in this function)
rmageml.c:289: error: syntax error before ')' token
rmageml.c:290: error: syntax error before ')' token
rmageml.c:291: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:293: error: `rmagestk' undeclared (first use in this function)
rmageml.c:293: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:294: error: `cls' undeclared (first use in this function)
rmageml.c:296: error: `mid' undeclared (first use in this function)
rmageml.c:298: error: `jQTD' undeclared (first use in this function)
rmageml.c:299: error: `jrf' undeclared (first use in this function)
rmageml.c:300: error: `jrb' undeclared (first use in this function)
rmageml.c:301: error: `jgf' undeclared (first use in this function)
rmageml.c:302: error: `jgb' undeclared (first use in this function)
rmageml.c:304: error: `result' undeclared (first use in this function)
rmageml.c:312: error: syntax error before "buf"
rmageml.c:314: error: `buf' undeclared (first use in this function)
rmageml.c:318: error: `i' undeclared (first use in this function)
rmageml.c: In function `getExternalData':
rmageml.c:329: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:329: error: `env' undeclared (first use in this function)
rmageml.c:330: error: `JavaVM' undeclared (first use in this function)
rmageml.c:330: error: `jvm' undeclared (first use in this function)
rmageml.c:331: error: `jclass' undeclared (first use in this function)
rmageml.c:331: error: syntax error before "cls"
rmageml.c:332: error: `jobject' undeclared (first use in this function)
rmageml.c:333: error: `jmethodID' undeclared (first use in this function)
rmageml.c:334: error: `jobjectArray' undeclared (first use in this function)
rmageml.c:335: error: `jstring' undeclared (first use in this function)
rmageml.c:338: error: `jsize' undeclared (first use in this function)
rmageml.c:343: error: syntax error before ')' token
rmageml.c:344: error: syntax error before ')' token
rmageml.c:345: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:347: error: `rmagestk' undeclared (first use in this function)
rmageml.c:347: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:348: error: `cls' undeclared (first use in this function)
rmageml.c:350: error: `mid' undeclared (first use in this function)
rmageml.c:351: error: `jarrayID' undeclared (first use in this function)
rmageml.c:352: error: `jDED' undeclared (first use in this function)
rmageml.c:353: error: `jpackage' undeclared (first use in this function)
rmageml.c:355: error: `result' undeclared (first use in this function)
rmageml.c:359: error: `alen' undeclared (first use in this function)
rmageml.c:363: error: syntax error before "jstr"
rmageml.c:364: error: `jstr' undeclared (first use in this function)
rmageml.c: In function `getQuantitationTypes':
rmageml.c:376: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:376: error: `env' undeclared (first use in this function)
rmageml.c:377: error: `JavaVM' undeclared (first use in this function)
rmageml.c:377: error: `jvm' undeclared (first use in this function)
rmageml.c:378: error: `jclass' undeclared (first use in this function)
rmageml.c:378: error: syntax error before "cls"
rmageml.c:379: error: `jobject' undeclared (first use in this function)
rmageml.c:380: error: `jmethodID' undeclared (first use in this function)
rmageml.c:381: error: `jobjectArray' undeclared (first use in this function)
rmageml.c:382: error: `jstring' undeclared (first use in this function)
rmageml.c:383: error: `jsize' undeclared (first use in this function)
rmageml.c:388: error: syntax error before ')' token
rmageml.c:389: error: syntax error before ')' token
rmageml.c:390: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:392: error: `rmagestk' undeclared (first use in this function)
rmageml.c:392: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:394: error: `cls' undeclared (first use in this function)
rmageml.c:395: error: `mid' undeclared (first use in this function)
rmageml.c:396: error: `jQTD' undeclared (first use in this function)
rmageml.c:397: error: `result' undeclared (first use in this function)
rmageml.c:400: error: `alen' undeclared (first use in this function)
rmageml.c:404: error: syntax error before "jstr"
rmageml.c:405: error: `jstr' undeclared (first use in this function)
rmageml.c: In function `getQTypeDescription':
rmageml.c:417: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:417: error: `env' undeclared (first use in this function)
rmageml.c:418: error: `JavaVM' undeclared (first use in this function)
rmageml.c:418: error: `jvm' undeclared (first use in this function)
rmageml.c:419: error: `jclass' undeclared (first use in this function)
rmageml.c:419: error: syntax error before "cls"
rmageml.c:420: error: `jobject' undeclared (first use in this function)
rmageml.c:421: error: `jmethodID' undeclared (first use in this function)
rmageml.c:422: error: `jobjectArray' undeclared (first use in this function)
rmageml.c:423: error: `jstring' undeclared (first use in this function)
rmageml.c:426: error: syntax error before ')' token
rmageml.c:427: error: syntax error before ')' token
rmageml.c:428: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:430: error: `rmagestk' undeclared (first use in this function)
rmageml.c:430: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:431: error: `cls' undeclared (first use in this function)
rmageml.c:433: error: `jQTypeID' undeclared (first use in this function)
rmageml.c:434: error: `mid' undeclared (first use in this function)
rmageml.c:435: error: `result' undeclared (first use in this function)
rmageml.c: In function `createNewQTDim':
rmageml.c:451: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:451: error: `env' undeclared (first use in this function)
rmageml.c:452: error: `JavaVM' undeclared (first use in this function)
rmageml.c:452: error: `jvm' undeclared (first use in this function)
rmageml.c:453: error: `jclass' undeclared (first use in this function)
rmageml.c:453: error: syntax error before "cls"
rmageml.c:454: error: `jobject' undeclared (first use in this function)
rmageml.c:455: error: `jmethodID' undeclared (first use in this function)
rmageml.c:456: error: `jint' undeclared (first use in this function)
rmageml.c:458: error: syntax error before ')' token
rmageml.c:459: error: syntax error before ')' token
rmageml.c:460: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:462: error: `rmagestk' undeclared (first use in this function)
rmageml.c:462: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:463: error: `cls' undeclared (first use in this function)
rmageml.c:464: error: `mid' undeclared (first use in this function)
rmageml.c:466: error: `jqtdimsize' undeclared (first use in this function)
rmageml.c:466: error: syntax error before "INTEGER"
rmageml.c: In function `addQuantitationTypeInfo':
rmageml.c:472: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:472: error: `env' undeclared (first use in this function)
rmageml.c:473: error: `JavaVM' undeclared (first use in this function)
rmageml.c:473: error: `jvm' undeclared (first use in this function)
rmageml.c:474: error: `jclass' undeclared (first use in this function)
rmageml.c:474: error: syntax error before "cls"
rmageml.c:475: error: `jobject' undeclared (first use in this function)
rmageml.c:476: error: `jmethodID' undeclared (first use in this function)
rmageml.c:477: error: `jstring' undeclared (first use in this function)
rmageml.c:484: error: syntax error before ')' token
rmageml.c:485: error: syntax error before ')' token
rmageml.c:486: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:488: error: `rmagestk' undeclared (first use in this function)
rmageml.c:488: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:489: error: `cls' undeclared (first use in this function)
rmageml.c:491: error: `mid' undeclared (first use in this function)
rmageml.c:492: error: `jqtID' undeclared (first use in this function)
rmageml.c:493: error: `jqtName' undeclared (first use in this function)
rmageml.c:494: error: `jqtDescription' undeclared (first use in this function)
rmageml.c:495: error: `jqtScale' undeclared (first use in this function)
rmageml.c:496: error: `jqtDataType' undeclared (first use in this function)
rmageml.c:497: error: `jderived' undeclared (first use in this function)
rmageml.c: In function `createNewMBASet':
rmageml.c:512: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:512: error: `env' undeclared (first use in this function)
rmageml.c:513: error: `JavaVM' undeclared (first use in this function)
rmageml.c:513: error: `jvm' undeclared (first use in this function)
rmageml.c:514: error: `jclass' undeclared (first use in this function)
rmageml.c:514: error: syntax error before "cls"
rmageml.c:515: error: `jobject' undeclared (first use in this function)
rmageml.c:516: error: `jmethodID' undeclared (first use in this function)
rmageml.c:517: error: `jint' undeclared (first use in this function)
rmageml.c:519: error: syntax error before ')' token
rmageml.c:520: error: syntax error before ')' token
rmageml.c:521: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:523: error: `rmagestk' undeclared (first use in this function)
rmageml.c:523: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:524: error: `cls' undeclared (first use in this function)
rmageml.c:525: error: `mid' undeclared (first use in this function)
rmageml.c:527: error: `jsizeMBA' undeclared (first use in this function)
rmageml.c:527: error: syntax error before "INTEGER"
rmageml.c: In function `setMBA':
rmageml.c:536: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:536: error: `env' undeclared (first use in this function)
rmageml.c:537: error: `JavaVM' undeclared (first use in this function)
rmageml.c:537: error: `jvm' undeclared (first use in this function)
rmageml.c:538: error: `jclass' undeclared (first use in this function)
rmageml.c:538: error: syntax error before "cls"
rmageml.c:539: error: `jobject' undeclared (first use in this function)
rmageml.c:540: error: `jmethodID' undeclared (first use in this function)
rmageml.c:541: error: `jstring' undeclared (first use in this function)
rmageml.c:543: error: syntax error before ')' token
rmageml.c:544: error: syntax error before ')' token
rmageml.c:545: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:547: error: `rmagestk' undeclared (first use in this function)
rmageml.c:547: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:548: error: `cls' undeclared (first use in this function)
rmageml.c:549: error: `mid' undeclared (first use in this function)
rmageml.c:550: error: `jmba' undeclared (first use in this function)
rmageml.c: In function `updateMAGEML':
rmageml.c:557: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:557: error: `env' undeclared (first use in this function)
rmageml.c:558: error: `JavaVM' undeclared (first use in this function)
rmageml.c:558: error: `jvm' undeclared (first use in this function)
rmageml.c:559: error: `jclass' undeclared (first use in this function)
rmageml.c:559: error: syntax error before "cls"
rmageml.c:560: error: `jobject' undeclared (first use in this function)
rmageml.c:561: error: `jmethodID' undeclared (first use in this function)
rmageml.c:562: error: `jstring' undeclared (first use in this function)
rmageml.c:568: error: `jint' undeclared (first use in this function)
rmageml.c:576: error: syntax error before ')' token
rmageml.c:577: error: syntax error before ')' token
rmageml.c:578: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:580: error: `rmagestk' undeclared (first use in this function)
rmageml.c:580: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:581: error: `cls' undeclared (first use in this function)
rmageml.c:582: error: `mid' undeclared (first use in this function)
rmageml.c:584: error: `jfile' undeclared (first use in this function)
rmageml.c:585: error: `jprotocolID' undeclared (first use in this function)
rmageml.c:586: error: `jprotocol' undeclared (first use in this function)
rmageml.c:587: error: `jdate' undeclared (first use in this function)
rmageml.c:588: error: `jqtDimID' undeclared (first use in this function)
rmageml.c:589: error: `jtransformationID' undeclared (first use in this function)
rmageml.c:590: error: `jarrayID' undeclared (first use in this function)
rmageml.c:591: error: `jDED' undeclared (first use in this function)
rmageml.c:592: error: `jBAD' undeclared (first use in this function)
rmageml.c:593: error: `jderivedBioAssayID' undeclared (first use in this function)
rmageml.c:594: error: `jderivedBioAssayDataID' undeclared (first use in this function)
rmageml.c:595: error: `jnumberOfFeatures' undeclared (first use in this function)
rmageml.c:595: error: syntax error before "INTEGER"
rmageml.c: In function `writeMAGEML':
rmageml.c:615: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:615: error: `env' undeclared (first use in this function)
rmageml.c:616: error: `JavaVM' undeclared (first use in this function)
rmageml.c:616: error: `jvm' undeclared (first use in this function)
rmageml.c:617: error: `jclass' undeclared (first use in this function)
rmageml.c:617: error: syntax error before "cls"
rmageml.c:618: error: `jobject' undeclared (first use in this function)
rmageml.c:619: error: `jmethodID' undeclared (first use in this function)
rmageml.c:620: error: `jstring' undeclared (first use in this function)
rmageml.c:623: error: syntax error before ')' token
rmageml.c:624: error: syntax error before ')' token
rmageml.c:625: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:627: error: `rmagestk' undeclared (first use in this function)
rmageml.c:627: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:628: error: `cls' undeclared (first use in this function)
rmageml.c:629: error: `mid' undeclared (first use in this function)
rmageml.c:630: error: `jfile' undeclared (first use in this function)
rmageml.c:631: error: `jdirectory' undeclared (first use in this function)
rmageml.c: In function `getVoidArrayInt':
rmageml.c:643: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:643: error: `env' undeclared (first use in this function)
rmageml.c:644: error: `JavaVM' undeclared (first use in this function)
rmageml.c:644: error: `jvm' undeclared (first use in this function)
rmageml.c:645: error: `jclass' undeclared (first use in this function)
rmageml.c:645: error: syntax error before "cls"
rmageml.c:646: error: `jobject' undeclared (first use in this function)
rmageml.c:647: error: `jmethodID' undeclared (first use in this function)
rmageml.c:648: error: `jintArray' undeclared (first use in this function)
rmageml.c:649: error: `jsize' undeclared (first use in this function)
rmageml.c:650: error: `jint' undeclared (first use in this function)
rmageml.c:653: error: syntax error before ')' token
rmageml.c:654: error: syntax error before ')' token
rmageml.c:655: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:657: error: `rmagestk' undeclared (first use in this function)
rmageml.c:657: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:658: error: `cls' undeclared (first use in this function)
rmageml.c:659: error: `mid' undeclared (first use in this function)
rmageml.c:660: error: `result' undeclared (first use in this function)
rmageml.c:661: error: `alen' undeclared (first use in this function)
rmageml.c:662: error: syntax error before "buf"
rmageml.c:664: error: `buf' undeclared (first use in this function)
rmageml.c:668: error: `i' undeclared (first use in this function)
rmageml.c: In function `getVoidArrayStr':
rmageml.c:678: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:678: error: `env' undeclared (first use in this function)
rmageml.c:679: error: `JavaVM' undeclared (first use in this function)
rmageml.c:679: error: `jvm' undeclared (first use in this function)
rmageml.c:680: error: `jclass' undeclared (first use in this function)
rmageml.c:680: error: syntax error before "cls"
rmageml.c:681: error: `jobject' undeclared (first use in this function)
rmageml.c:682: error: `jmethodID' undeclared (first use in this function)
rmageml.c:683: error: `jobjectArray' undeclared (first use in this function)
rmageml.c:684: error: `jsize' undeclared (first use in this function)
rmageml.c:688: error: syntax error before ')' token
rmageml.c:689: error: syntax error before ')' token
rmageml.c:690: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:692: error: `rmagestk' undeclared (first use in this function)
rmageml.c:692: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:693: error: `cls' undeclared (first use in this function)
rmageml.c:694: error: `mid' undeclared (first use in this function)
rmageml.c:695: error: `result' undeclared (first use in this function)
rmageml.c:696: error: `alen' undeclared (first use in this function)
rmageml.c:700: error: `jstring' undeclared (first use in this function)
rmageml.c:700: error: syntax error before "jstr"
rmageml.c:701: error: `jstr' undeclared (first use in this function)
rmageml.c: In function `getVoidStr':
rmageml.c:714: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:714: error: `env' undeclared (first use in this function)
rmageml.c:715: error: `JavaVM' undeclared (first use in this function)
rmageml.c:715: error: `jvm' undeclared (first use in this function)
rmageml.c:716: error: `jclass' undeclared (first use in this function)
rmageml.c:716: error: syntax error before "cls"
rmageml.c:717: error: `jobject' undeclared (first use in this function)
rmageml.c:718: error: `jmethodID' undeclared (first use in this function)
rmageml.c:719: error: `jobjectArray' undeclared (first use in this function)
rmageml.c:722: error: syntax error before ')' token
rmageml.c:723: error: syntax error before ')' token
rmageml.c:724: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:726: error: `rmagestk' undeclared (first use in this function)
rmageml.c:726: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:727: error: `cls' undeclared (first use in this function)
rmageml.c:728: error: `mid' undeclared (first use in this function)
rmageml.c:729: error: `result' undeclared (first use in this function)
rmageml.c: In function `getVoidVoid':
rmageml.c:739: error: `JNIEnv' undeclared (first use in this function)
rmageml.c:739: error: `env' undeclared (first use in this function)
rmageml.c:740: error: `JavaVM' undeclared (first use in this function)
rmageml.c:740: error: `jvm' undeclared (first use in this function)
rmageml.c:741: error: `jclass' undeclared (first use in this function)
rmageml.c:741: error: syntax error before "cls"
rmageml.c:742: error: `jobject' undeclared (first use in this function)
rmageml.c:743: error: `jmethodID' undeclared (first use in this function)
rmageml.c:745: error: syntax error before ')' token
rmageml.c:746: error: syntax error before ')' token
rmageml.c:747: error: `JNI_VERSION_1_2' undeclared (first use in this function)
rmageml.c:749: error: `rmagestk' undeclared (first use in this function)
rmageml.c:749: error: syntax error before "R_ExternalPtrAddr"
rmageml.c:750: error: `cls' undeclared (first use in this function)
rmageml.c:751: error: `mid' undeclared (first use in this function)
rmageml.c: At top level:
rmageml.c:17: warning: 'JavaMethod_type_tag' defined but not used
make[3]: *** [rmageml.o] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-RMAGEML] Error 2
*** Installation of RMAGEML failed ***

Removing 'D:/biocbld/1.8d/tmpdir/Rinst806004287/RMAGEML'
 ERROR
Installation failed.
Removing 'D:/biocbld/1.8d/tmpdir/Rinst806004287'