CHECK report for EBImage on gopher5

* checking for working latex ... OK * using log directory '/loc/biocbuild/1.8d/Rpacks/EBImage.Rcheck' * using Version 2.3.1 (2006-06-01) * checking for file 'EBImage/DESCRIPTION' ... OK * this is package 'EBImage' version '1.2.2' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'EBImage' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... WARNING See section 'Generic functions and methods' of the 'Writing R Extensions' manual. * checking replacement functions ... WARNING In R, the argument of a replacement function which corresponds to the right hand side must be named 'value'. * checking foreign function calls ... WARNING See section 'System and foreign language interfaces' of the 'Writing R Extensions' manual. * checking Rd files ... OK * checking for missing documentation entries ... WARNING All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... WARNING * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * creating EBImage-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating EBImage-manual.tex ... OK * checking EBImage-manual.tex ... OK WARNING: There were 5 warnings, see /loc/biocbuild/1.8d/Rpacks/EBImage.Rcheck/00check.log for details

* Installing *source* package 'EBImage' ... checking for Magick++-config... yes ImageMagick version 6.0.7 found checking for Magick++-config... yes ImageMagick++ includes located in -I/usr/include R found in: /loc/biocbuild/1.8d/R configure: creating ./config.status config.status: creating src/Makevars ** libs g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -pthread -fpic -g -O2 -Wall -c algorithms2D.cpp -o algorithms2D.o g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -pthread -fpic -g -O2 -Wall -c common.cpp -o common.o g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -pthread -fpic -g -O2 -Wall -c conversions.cpp -o conversions.o g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -pthread -fpic -g -O2 -Wall -c display.cpp -o display.o g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -pthread -fpic -g -O2 -Wall -c filters2D.cpp -o filters2D.o g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -pthread -fpic -g -O2 -Wall -c filters2D_magick.cpp -o filters2D_magick.o g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -pthread -fpic -g -O2 -Wall -c io.cpp -o io.o g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -pthread -fpic -g -O2 -Wall -c libmain.cpp -o libmain.o g++ -shared -L/usr/local/lib64 -o EBImage.so algorithms2D.o common.o conversions.o display.o filters2D.o filters2D_magick.o io.o libmain.o -L/usr/lib64 -L/usr/lib64 -L/usr/X11R6/lib64 -L/usr/lib64 -Wl,--rpath -Wl,/usr/lib64 -lfreetype -L/usr/lib -lMagick++ -lWand -lMagick -llcms -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread ** R ** inst ** save image ** help >>> Building/Updating help pages for package 'EBImage' Formats: text html latex example algorithms2D.objectCount text html latex example class.Image2D text html latex example class.Image3D text html latex example filters2D.distMap text html latex example filters2D.magick-colors text html latex example filters2D.magick-enhance text html latex example filters2D.magick-segment text html latex example filters2D.magick-transform text html latex example filters2D.magick text html latex example filters2D.thresh text html latex example image.io text html latex example internals text html latex ** building package indices ... * DONE (EBImage)

Package 45/172	OS	Arch	BUILD	CHECK	BUILD BIN
EBImage 1.2.2 Oleg Sklyar	Linux (SUSE 9.2)	x86_64	OK	[ WARNINGS ]
	Linux (SUSE 9.2)	i686	OK	WARNINGS
	Solaris 2.9	sparc	OK	ERROR
	Linux (SUSE 10.0)	x86_64	OK	WARNINGS
	Windows Server 2003	x86_64	ERROR	skipped	skipped

EBImage

1.2.2

Command output