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limma

2.6.2

Gordon Smyth
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc[ OK ] OK 
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Package: limma
Version: 2.6.2
Command: /loc/biocbuild/1.8d/R/bin/R CMD build limma
RetCode: 0
Time: 43.4 seconds
Status: OK
PackageFile: limma_2.6.2.tar.gz

Command output

* checking for file 'limma/DESCRIPTION' ... OK
* preparing 'limma':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'limma' ...
** R
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'limma'
     Formats: text html latex example 
  01Introduction                    text    html    latex
  02classes                         text    html    latex
  03reading                         text    html    latex
  04Background                      text    html    latex
  05Normalization                   text    html    latex
  06linearmodels                    text    html    latex
  07SingleChannel                   text    html    latex
  08Tests                           text    html    latex
  09Diagnostics                     text    html    latex
  10Other                           text    html    latex
  LargeDataObject                   text    html    latex   example
  PrintLayout                       text    html    latex   example
  TestResults                       text    html    latex   example
  anova-method                      text    html    latex
  arrayWeights                      text    html    latex   example
  arrayWeightsQuick                 text    html    latex   example
  asMatrixWeights                   text    html    latex   example
  asdataframe                       text    html    latex
  asmalist                          text    html    latex
  asmatrix                          text    html    latex
  auROC                             text    html    latex   example
  avedups                           text    html    latex
  backgroundcorrect                 text    html    latex   example
  blockDiag                         text    html    latex   example
  bwss                              text    html    latex
  bwss.matrix                       text    html    latex
  cbind                             text    html    latex   example
  changelog                         text    html    latex
  channel2M                         text    html    latex   example
  classifytests                     text    html    latex   example
  contrasts.fit                     text    html    latex   example
  controlStatus                     text    html    latex   example
  convest                           text    html    latex   example
  decideTests                       text    html    latex
  dim                               text    html    latex   example
  dimnames                          text    html    latex
  dnormexp                          text    html    latex
  dupcor                            text    html    latex   example
  ebayes                            text    html    latex   example
  exprset2                          text    html    latex
  fitfdist                          text    html    latex
  fitted.MArrayLM                   text    html    latex
  geneSetTest                       text    html    latex   example
  getColClasses                     text    html    latex   example
  getSpacing                        text    html    latex   example
  getlayout                         text    html    latex   example
  gls.series                        text    html    latex
  gridspotrc                        text    html    latex
  heatdiagram                       text    html    latex   example
  helpMethods                       text    html    latex   example
  imageplot                         text    html    latex   example
  imageplot3by2                     text    html    latex
  intraspotCorrelation              text    html    latex   example
  isfullrank                        text    html    latex   example
  isnumeric                         text    html    latex   example
  kooperberg                        text    html    latex   example
  limmaUsersGuide                   text    html    latex   example
  lm.series                         text    html    latex
  lmFit                             text    html    latex   example
  lmscFit                           text    html    latex   example
  loessfit                          text    html    latex   example
  m.spot                            text    html    latex
  ma3x3                             text    html    latex   example
  makeContrasts                     text    html    latex   example
  makeunique                        text    html    latex   example
  malist                            text    html    latex
  marraylm                          text    html    latex
  matvec                            text    html    latex   example
  mdplot                            text    html    latex
  merge                             text    html    latex   example
  modelMatrix                       text    html    latex   example
  modifyWeights                     text    html    latex   example
  mrlm                              text    html    latex
  normalizeMedianAbsValues          text    html    latex   example
  normalizeRobustSpline             text    html    latex   example
  normalizeWithinArrays             text    html    latex   example
  normalizebetweenarrays            text    html    latex   example
  normalizeprintorder               text    html    latex   example
  normalizequantiles                text    html    latex
  normexp                           text    html    latex
  normexpfit                        text    html    latex   example
  normexpsignal                     text    html    latex   example
  plotDensities                     text    html    latex   example
  plotFB                            text    html    latex
  plotma                            text    html    latex   example
  plotma3by2                        text    html    latex
  plotprinttiploess                 text    html    latex
  poolvar                           text    html    latex   example
  printHead                         text    html    latex
  printorder                        text    html    latex   example
  protectMetachar                   text    html    latex   example
  qqt                               text    html    latex   example
  qualwt                            text    html    latex   example
  read.maimages                     text    html    latex   example
  read.matrix                       text    html    latex
  read.series                       text    html    latex
  readGPRHeader                     text    html    latex
  readImaGeneHeader                 text    html    latex   example
  readSpotTypes                     text    html    latex
  readTargets                       text    html    latex
  readgal                           text    html    latex   example
  removeext                         text    html    latex   example
  residuals.MArrayLM                text    html    latex
  rg.genepix                        text    html    latex
  rg.quantarray                     text    html    latex
  rg.series.spot                    text    html    latex
  rg.spot                           text    html    latex
  rglist                            text    html    latex
  splitName                         text    html    latex   example
  squeezeVar                        text    html    latex   example
  subsetting                        text    html    latex   example
  summary                           text    html    latex
  targetsA2C                        text    html    latex   example
  tmixture                          text    html    latex
  toptable                          text    html    latex   example
  trigammainverse                   text    html    latex   example
  trimWhiteSpace                    text    html    latex   example
  uniquegenelist                    text    html    latex   example
  unwrapdups                        text    html    latex   example
  venn                              text    html    latex   example
  volcanoplot                       text    html    latex   example
  weightedmedian                    text    html    latex   example
  writefit                          text    html    latex
  wtVariables                       text    html    latex   example
  zscore                            text    html    latex   example
** building package indices ...
* DONE (limma)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'limma_2.6.2.tar.gz'