This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see TENxVisiumData.

Visium spatial gene expression data by 10X Genomics

Bioconductor version: 3.18

Collection of Visium spatial gene expression datasets by 10X Genomics, formatted into objects of class SpatialExperiment. Data cover various organisms and tissues, and include: single- and multi-section experiments, as well as single sections subjected to both whole transcriptome and targeted panel analysis. Datasets may be used for testing of and as examples in packages, for tutorials and workflow demonstrations, or similar purposes.

Author: Helena L. Crowell [aut, cre]

Maintainer: Helena L. Crowell <helena at crowell.eu>

Citation (from within R, enter citation("TENxVisiumData")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

TENxVisiumData HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch
Version 1.10.0
License MIT + file LICENSE
Depends ExperimentHub, SpatialExperiment
Imports utils
System Requirements
URL https://github.com/helenalc/TENxVisiumData
Bug Reports https://github.com/helenalc/TENxVisiumData/issues
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Suggests BiocStyle, knitr, rmarkdown
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Follow Installation instructions to use this package in your R session.

Source Package TENxVisiumData_1.10.0.tar.gz
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Source Repository git clone https://git.bioconductor.org/packages/TENxVisiumData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxVisiumData
Package Short Url https://bioconductor.org/packages/TENxVisiumData/
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