PasillaTranscriptExpr
Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.
Bioconductor version: Release (3.19)
Provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.
Author: Malgorzata Nowicka [aut, cre]
Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>
Citation (from within R, enter
citation("PasillaTranscriptExpr")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PasillaTranscriptExpr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PasillaTranscriptExpr")
Generation of transcript counts from pasilla dataset with kallisto | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, RNASeqData, SequencingData |
Version | 1.32.0 |
License | GPL (>= 3) |
Depends | R (>= 3.3.0) |
Imports | |
System Requirements | |
URL |
See More
Suggests | rtracklayer, BiocStyle, knitr, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | DRIMSeq |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | PasillaTranscriptExpr_1.32.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/PasillaTranscriptExpr |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PasillaTranscriptExpr |
Package Short Url | https://bioconductor.org/packages/PasillaTranscriptExpr/ |
Package Downloads Report | Download Stats |