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ChIPexoQualExample

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data


Bioconductor version: Release (3.18)

Data for the ChIPexoQual package, consisting of (3) chromosome 1 aligned reads from a ChIP-exo experiment for FoxA1 in mouse liver cell lines aligned to the mm9 genome.

Author: Rene Welch, Dongjun Chung, Sunduz Keles

Maintainer: Rene Welch <welch at stat.wisc.edu>

Citation (from within R, enter citation("ChIPexoQualExample")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPexoQualExample")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPexoQualExample")
ChIPexoQualExample HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, Genome
Version 1.26.0
License GPL (>= 2)
Depends R (>= 3.3)
Imports
System Requirements
URL http://www.github.com/keleslab/ChIPexoQualExample
See More
Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me ChIPexoQual
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChIPexoQualExample_1.26.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ChIPexoQualExample
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChIPexoQualExample
Package Short Url https://bioconductor.org/packages/ChIPexoQualExample/
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