This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see vtpnet.

variant-transcription factor-phenotype networks

Bioconductor version: 3.18

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("vtpnet")):


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if (!require("BiocManager", quietly = TRUE))


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vtpnet: variant-transcription factor-network tools PDF R Script
Reference Manual PDF


biocViews Network, Software
Version 0.42.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License Artistic-2.0
Depends R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
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Suggests MotifDb, VariantAnnotation, Rgraphviz
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Source Package vtpnet_0.42.0.tar.gz
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