vsclust
Feature-based variance-sensitive quantitative clustering
Bioconductor version: Release (3.20)
Feature-based variance-sensitive clustering of omics data. Optimizes cluster assignment by taking into account individual feature variance. Includes several modules for statistical testing, clustering and enrichment analysis.
Author: Veit Schwaemmle [aut, cre]
Maintainer: Veit Schwaemmle <veits at bmb.sdu.dk>
Citation (from within R, enter
citation("vsclust")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("vsclust")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("vsclust")
VSClust on Bioconductor object | HTML | R Script |
VSClust workflow | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Annotation, Clustering, DifferentialExpression, Metabolomics, PrincipalComponent, Proteomics, Software, Visualization |
Version | 1.8.0 |
In Bioconductor since | BioC 3.16 (R-4.2) (2 years) |
License | GPL-2 |
Depends | R (>= 4.2.0) |
Imports | matrixStats, limma, parallel, shiny, qvalue, grDevices, stats, MultiAssayExperiment, graphics |
System Requirements | |
URL |
See More
Suggests | knitr, yaml, testthat (>= 3.0.0), rmarkdown, BiocStyle, clusterProfiler |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | vsclust_1.8.0.tar.gz |
Windows Binary (x86_64) | vsclust_1.8.0.zip (64-bit only) |
macOS Binary (x86_64) | vsclust_1.8.0.tgz |
macOS Binary (arm64) | vsclust_1.7.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/vsclust |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/vsclust |
Bioc Package Browser | https://code.bioconductor.org/browse/vsclust/ |
Package Short Url | https://bioconductor.org/packages/vsclust/ |
Package Downloads Report | Download Stats |