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RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: Release (3.18)

Differential expression analysis of RNA-seq using the Poisson-Tweedie (PT) family of distributions. PT distributions are described by a mean, a dispersion and a shape parameter and include Poisson and NB distributions, among others, as particular cases. An important feature of this family is that, while the Negative Binomial (NB) distribution only allows a quadratic mean-variance relationship, the PT distributions generalizes this relationship to any orde.

Author: Dolors Pelegri-Siso [aut, cre] , Juan R. Gonzalez [aut] , Mikel Esnaola [aut], Robert Castelo [aut]

Maintainer: Dolors Pelegri-Siso <dolors.pelegri at isglobal.org>

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tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions PDF R Script
Reference Manual PDF


biocViews DNASeq, DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.48.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL (>= 2)
Depends R (>= 4.3.0)
Imports Rcpp (>= 1.0.10), MASS, limma, edgeR, parallel, cqn, grDevices, graphics, stats, utils
System Requirements
URL https://github.com/isglobal-brge/tweeDEseq/
Bug Reports https://github.com/isglobal-brge/tweeDEseq/issues
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Suggests tweeDEseqCountData, xtable
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Source Package tweeDEseq_1.48.0.tar.gz
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