target
Predict Combined Function of Transcription Factors
Bioconductor version: Release (3.19)
Implement the BETA algorithm for infering direct target genes from DNA-binding and perturbation expression data Wang et al. (2013)
Author: Mahmoud Ahmed [aut, cre]
Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>
citation("target")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("target")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("target")
Using target to predict combined binding | HTML | R Script |
Using the target package | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Software, StatisticalMethod, Transcription |
Version | 1.18.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
License | GPL-3 |
Depends | R (>= 3.6) |
Imports | BiocGenerics, GenomicRanges, IRanges, matrixStats, methods, stats, graphics, shiny |
System Requirements | |
URL | https://github.com/MahShaaban/target |
Bug Reports | https://github.com/MahShaaban/target/issues |
See More
Suggests | testthat (>= 2.1.0), knitr, rmarkdown, shinytest, shinyBS, covr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | target_1.18.0.tar.gz |
Windows Binary | target_1.18.0.zip |
macOS Binary (x86_64) | target_1.18.0.tgz |
macOS Binary (arm64) | target_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/target |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/target |
Bioc Package Browser | https://code.bioconductor.org/browse/target/ |
Package Short Url | https://bioconductor.org/packages/target/ |
Package Downloads Report | Download Stats |