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rexposome

Exposome exploration and outcome data analysis


Bioconductor version: Release (3.18)

Package that allows to explore the exposome and to perform association analyses between exposures and health outcomes.

Author: Carles Hernandez-Ferrer [aut, cre], Juan R. Gonzalez [aut], Xavier EscribĂ -Montagut [aut]

Maintainer: Xavier EscribĂ  Montagut <xavier.escriba at isglobal.org>

Citation (from within R, enter citation("rexposome")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rexposome")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rexposome")
Dealing with Multiple Imputations HTML R Script
Exposome Data Analysis HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews BiologicalQuestion, BiomedicalInformatics, Classification, Clustering, DataImport, DataRepresentation, ExperimentalDesign, Infrastructure, MultipleComparison, Software
Version 1.24.1
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License MIT + file LICENSE
Depends R (>= 3.5), Biobase
Imports methods, utils, stats, lsr, FactoMineR, stringr, circlize, corrplot, ggplot2, ggridges, reshape2, pryr, S4Vectors, imputeLCMD, scatterplot3d, glmnet, gridExtra, grid, Hmisc, gplots, gtools, scales, lme4, grDevices, graphics, ggrepel, mice
System Requirements
URL
See More
Suggests mclust, flexmix, testthat, BiocStyle, knitr, formatR, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me omicRexposome
Suggests Me brgedata
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rexposome_1.24.1.tar.gz
Windows Binary rexposome_1.24.1.zip
macOS Binary (x86_64) rexposome_1.24.1.tgz
macOS Binary (arm64) rexposome_1.24.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/rexposome
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rexposome
Bioc Package Browser https://code.bioconductor.org/browse/rexposome/
Package Short Url https://bioconductor.org/packages/rexposome/
Package Downloads Report Download Stats