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rWikiPathways

rWikiPathways - R client library for the WikiPathways API


Bioconductor version: Release (3.18)

Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.

Author: Egon Willighagen [aut, cre] , Alex Pico [aut]

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>

Citation (from within R, enter citation("rWikiPathways")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rWikiPathways")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rWikiPathways")
1. Overview HTML R Script
2. rWikiPathways and BridgeDbR HTML R Script
3. rWikiPathways and RCy3 HTML R Script
4. Pathway Analysis HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization
Version 1.22.1
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License MIT + file LICENSE
Depends
Imports httr, utils, XML, rjson, data.table, RCurl, dplyr, tidyr, readr, stringr, purrr, lubridate
System Requirements
URL https://github.com/wikipathways/rwikipathways
Bug Reports https://github.com/wikipathways/rwikipathways/issues
See More
Suggests testthat, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me famat, multiSight, NoRCE, TimiRGeN
Suggests Me TRONCO
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rWikiPathways_1.22.1.tar.gz
Windows Binary rWikiPathways_1.22.1.zip
macOS Binary (x86_64) rWikiPathways_1.22.1.tgz
macOS Binary (arm64) rWikiPathways_1.22.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/rWikiPathways
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rWikiPathways
Bioc Package Browser https://code.bioconductor.org/browse/rWikiPathways/
Package Short Url https://bioconductor.org/packages/rWikiPathways/
Package Downloads Report Download Stats