rTRM

DOI: 10.18129/B9.bioc.rTRM    

Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks

Bioconductor version: Release (3.14)

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRM")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rTRM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")

 

HTML R Script Introduction to rTRM
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.32.0
In Bioconductor since BioC 2.13 (R-3.0) (8 years)
License GPL-3
Depends R (>= 2.10), igraph (>= 1.0)
Imports methods, AnnotationDbi, DBI, RSQLite
LinkingTo
Suggests RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/ddiez/rTRM
BugReports https://github.com/ddiez/rTRM/issues
Depends On Me
Imports Me rTRMui
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rTRM_1.32.0.tar.gz
Windows Binary rTRM_1.32.0.zip
macOS 10.13 (High Sierra) rTRM_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rTRM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rTRM
Package Short Url https://bioconductor.org/packages/rTRM/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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