This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see qcmetrics.

A Framework for Quality Control

Bioconductor version: 3.18

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("qcmetrics")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Index file for the qcmetrics package vignette HTML R Script
Reference Manual PDF


biocViews ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.40.1
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-2
Depends R (>= 3.3)
Imports Biobase, methods, knitr, tools, xtable, pander, S4Vectors
System Requirements
URL http://lgatto.github.io/qcmetrics/articles/qcmetrics.html
Bug Reports https://github.com/lgatto/qcmetrics/issues
See More
Suggests affy, MSnbase, ggplot2, lattice, mzR, BiocStyle, rmarkdown, markdown
Linking To
Depends On Me
Imports Me MSstatsQC
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qcmetrics_1.40.1.tar.gz
Windows Binary qcmetrics_1.40.1.zip
macOS Binary (x86_64) qcmetrics_1.40.1.tgz
macOS Binary (arm64) qcmetrics_1.40.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/qcmetrics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qcmetrics
Bioc Package Browser https://code.bioconductor.org/browse/qcmetrics/
Package Short Url https://bioconductor.org/packages/qcmetrics/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive