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omicsPrint

Cross omic genetic fingerprinting


Bioconductor version: Release (3.18)

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Author: Maarten van Iterson [aut], Davy Cats [cre]

Maintainer: Davy Cats <davycats.dc at gmail.com>

Citation (from within R, enter citation("omicsPrint")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("omicsPrint")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("omicsPrint")
omicsPrint: detection of data linkage errors in multiple omics studies HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DNAMethylation, Epigenetics, GeneticVariability, Genetics, ImmunoOncology, QualityControl, Software, Transcription, Transcriptomics
Version 1.22.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL (>= 2)
Depends R (>= 3.5), MASS
Imports methods, matrixStats, graphics, stats, SummarizedExperiment, MultiAssayExperiment, RaggedExperiment
System Requirements
URL
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Suggests BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package omicsPrint_1.22.0.tar.gz
Windows Binary omicsPrint_1.22.0.zip
macOS Binary (x86_64) omicsPrint_1.22.0.tgz
macOS Binary (arm64) omicsPrint_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/omicsPrint
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/omicsPrint
Bioc Package Browser https://code.bioconductor.org/browse/omicsPrint/
Package Short Url https://bioconductor.org/packages/omicsPrint/
Package Downloads Report Download Stats