This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see miRSM.

Inferring miRNA sponge modules in heterogeneous data

Bioconductor version: 3.18

The package aims to identify miRNA sponge modules in heterogeneous data. It provides several functions to study miRNA sponge modules, including popular methods for inferring gene modules (candidate miRNA sponge modules), and a function to identify miRNA sponge modules, as well as several functions to conduct modular analysis of miRNA sponge modules.

Author: Junpeng Zhang [aut, cre]

Maintainer: Junpeng Zhang <zhangjunpeng411 at gmail.com>

Citation (from within R, enter citation("miRSM")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

miRSM: inferring miRNA sponge modules in heterogeneous data HTML R Script
Reference Manual PDF


biocViews BiomedicalInformatics, Clustering, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Microarray, Software
Version 1.20.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-3
Depends R (>= 3.5.0)
Imports WGCNA, flashClust, dynamicTreeCut, GFA, igraph, linkcomm, MCL, NMF, biclust, iBBiG, fabia, BicARE, isa2, s4vd, BiBitR, rqubic, Biobase, PMA, stats, dbscan, subspace, mclust, SOMbrero, ppclust, miRspongeR, Rcpp, utils, SummarizedExperiment, GSEABase, org.Hs.eg.db, MatrixCorrelation, energy
System Requirements
URL https://github.com/zhangjunpeng411/miRSM
Bug Reports https://github.com/zhangjunpeng411/miRSM/issues
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Suggests BiocStyle, knitr, rmarkdown, testthat
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Follow Installation instructions to use this package in your R session.

Source Package miRSM_1.20.0.tar.gz
Windows Binary miRSM_1.20.0.zip
macOS Binary (x86_64) miRSM_1.20.0.tgz
macOS Binary (arm64) miRSM_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRSM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRSM
Bioc Package Browser https://code.bioconductor.org/browse/miRSM/
Package Short Url https://bioconductor.org/packages/miRSM/
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