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matter

Out-of-memory dense and sparse signal arrays


Bioconductor version: Release (3.18)

Memory-efficient file-based data structures for dense and sparse vectors, matrices, arrays, and lists with applications to nonuniformly sampled signals and spectra.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("matter")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("matter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matter")
1. Matter 2: User guide for flexible out-of-memory data structures HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DataRepresentation, DimensionReduction, Infrastructure, Preprocessing, Software
Version 2.4.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends R (>= 4.0), BiocParallel, Matrix, methods
Imports BiocGenerics, ProtGenerics, digest, irlba, biglm, stats, stats4, graphics, grDevices, utils
System Requirements
URL https://github.com/kuwisdelu/matter
Bug Reports https://github.com/kuwisdelu/matter/issues
See More
Suggests BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me CardinalIO
Imports Me Cardinal
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package matter_2.4.0.tar.gz
Windows Binary matter_2.4.0.zip (64-bit only)
macOS Binary (x86_64) matter_2.4.0.tgz
macOS Binary (arm64) matter_2.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/matter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/matter
Bioc Package Browser https://code.bioconductor.org/browse/matter/
Package Short Url https://bioconductor.org/packages/matter/
Package Downloads Report Download Stats