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made4

Multivariate analysis of microarray data using ADE4


Bioconductor version: Release (3.18)

Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.

Author: Aedin Culhane

Maintainer: Aedin Culhane <Aedin at jimmy.harvard.edu>

Citation (from within R, enter citation("made4")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("made4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("made4")
Authoring R Markdown vignettes HTML R Script
Reference Manual PDF

Details

biocViews Classification, Clustering, DimensionReduction, GeneExpression, Microarray, MultipleComparison, PrincipalComponent, Sequencing, Software, Transcriptomics
Version 1.76.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License Artistic-2.0
Depends RColorBrewer, gplots, scatterplot3d, Biobase, SummarizedExperiment
Imports ade4
System Requirements
URL http://www.hsph.harvard.edu/aedin-culhane/
See More
Suggests affy, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me deco, omicade4
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package made4_1.76.0.tar.gz
Windows Binary made4_1.76.0.zip (64-bit only)
macOS Binary (x86_64) made4_1.76.0.tgz
macOS Binary (arm64) made4_1.76.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/made4
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/made4
Bioc Package Browser https://code.bioconductor.org/browse/made4/
Package Short Url https://bioconductor.org/packages/made4/
Package Downloads Report Download Stats