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mAPKL

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mAPKLData.

A Hybrid Feature Selection method for gene expression data


Bioconductor version: Release (3.18)

We propose a hybrid FS method (mAP-KL), which combines multiple hypothesis testing and affinity propagation (AP)-clustering algorithm along with the Krzanowski & Lai cluster quality index, to select a small yet informative subset of genes.

Author: Argiris Sakellariou

Maintainer: Argiris Sakellariou <argisake at gmail.com>

Citation (from within R, enter citation("mAPKL")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mAPKL")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DifferentialExpression, FeatureExtraction, GeneExpression, Microarray, Software
Version 1.32.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL (>= 2)
Depends R (>= 3.6.0), Biobase
Imports multtest, clusterSim, apcluster, limma, e1071, AnnotationDbi, methods, parmigene, igraph, reactome.db
System Requirements
URL
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Suggests BiocStyle, knitr, mAPKLData, hgu133plus2.db, RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/mAPKL
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mAPKL
Package Short Url https://bioconductor.org/packages/mAPKL/
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