DOI: 10.18129/B9.bioc.ensemblVEP    

R Interface to Ensembl Variant Effect Predictor

Bioconductor version: Release (3.16)

Query the Ensembl Variant Effect Predictor via the perl API.

Author: Valerie Obenchain and Lori Shepherd

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("ensemblVEP")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Annotation, SNP, Software, VariantAnnotation
Version 1.40.0
In Bioconductor since BioC 2.12 (R-3.0) (9.5 years)
License Artistic-2.0
Depends methods, BiocGenerics, GenomicRanges, VariantAnnotation
Imports S4Vectors(>= 0.9.25), Biostrings, SummarizedExperiment, GenomeInfoDb, stats
Suggests RUnit
SystemRequirements Ensembl VEP (API version 105) and the Perl modules DBI and DBD::mysql must be installed. See the package README and Ensembl installation instructions: http://www.ensembl.org/info/docs/tools/vep/script/vep_download.html#installer
Depends On Me
Imports Me MMAPPR2, TVTB
Suggests Me
Links To Me
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Source Package
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Source Repository git clone https://git.bioconductor.org/packages/ensemblVEP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ensemblVEP
Package Short Url https://bioconductor.org/packages/ensemblVEP/
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