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ecolitk

Meta-data and tools for E. coli


Bioconductor version: Release (3.18)

Meta-data and tools to work with E. coli. The tools are mostly plotting functions to work with circular genomes. They can used with other genomes/plasmids.

Author: Laurent Gautier

Maintainer: Laurent Gautier <lgautier at gmail.com>

Citation (from within R, enter citation("ecolitk")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ecolitk")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ecolitk")
ecolitk PDF R Script
Reference Manual PDF

Details

biocViews Annotation, Software, Visualization
Version 1.74.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL (>= 2)
Depends R (>= 2.10)
Imports Biobase, graphics, methods
System Requirements
URL
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Suggests ecoliLeucine, ecolicdf, graph, multtest, affy
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ecolitk_1.74.0.tar.gz
Windows Binary ecolitk_1.74.0.zip
macOS Binary (x86_64) ecolitk_1.74.0.tgz
macOS Binary (arm64) ecolitk_1.74.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ecolitk
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ecolitk
Bioc Package Browser https://code.bioconductor.org/browse/ecolitk/
Package Short Url https://bioconductor.org/packages/ecolitk/
Package Downloads Report Download Stats