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codelink

Manipulation of Codelink microarray data


Bioconductor version: Release (3.18)

This package facilitates reading, preprocessing and manipulating Codelink microarray data. The raw data must be exported as text file using the Codelink software.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("codelink")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("codelink")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("codelink")
Codelink Intruction PDF R Script
Codelink Legacy PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Microarray, OneChannel, Preprocessing, Software
Version 1.70.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License GPL-2
Depends R (>= 2.10), BiocGenerics(>= 0.3.2), methods, Biobase(>= 2.17.8), limma
Imports annotate
System Requirements
URL https://github.com/ddiez/codelink
Bug Reports https://github.com/ddiez/codelink/issues
See More
Suggests genefilter, parallel, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me AgiMicroRna, MAQCsubset
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package codelink_1.70.0.tar.gz
Windows Binary codelink_1.70.0.zip
macOS Binary (x86_64) codelink_1.70.0.tgz
macOS Binary (arm64) codelink_1.70.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/codelink
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/codelink
Bioc Package Browser https://code.bioconductor.org/browse/codelink/
Package Short Url https://bioconductor.org/packages/codelink/
Package Downloads Report Download Stats