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biocViews

Categorized views of R package repositories


Bioconductor version: Release (3.19)

Infrastructure to support 'views' used to classify Bioconductor packages. 'biocViews' are directed acyclic graphs of terms from a controlled vocabulary. There are three major classifications, corresponding to 'software', 'annotation', and 'experiment data' packages.

Author: VJ Carey <stvjc at channing.harvard.edu>, BJ Harshfield <rebjh at channing.harvard.edu>, S Falcon <sfalcon at fhcrc.org> , Sonali Arora, Lori Shepherd <lori.shepherd at roswellpark.org>

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("biocViews")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biocViews")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocViews")
biocViews-CreateRepositoryHTML HTML R Script
biocViews-HOWTO HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.72.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports Biobase, graph(>= 1.9.26), methods, RBGL(>= 1.13.5), tools, utils, XML, RCurl, RUnit, BiocManager
System Requirements
URL http://bioconductor.org/packages/biocViews
Bug Reports https://github.com/Bioconductor/biocViews/issues
See More
Suggests BiocGenerics, knitr, commonmark, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me AnnotationHubData, BiocCheck, BiocPkgTools, monocle, sigFeature, RforProteomics
Suggests Me packFinder, plasmut, rworkflows
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biocViews_1.72.0.tar.gz
Windows Binary biocViews_1.72.0.zip
macOS Binary (x86_64) biocViews_1.72.0.tgz
macOS Binary (arm64) biocViews_1.72.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biocViews
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biocViews
Bioc Package Browser https://code.bioconductor.org/browse/biocViews/
Package Short Url https://bioconductor.org/packages/biocViews/
Package Downloads Report Download Stats