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This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Normalization and reporting of Illumina SNP bead arrays

Bioconductor version: Release (3.19)

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at>

Citation (from within R, enter citation("beadarraySNP")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews CopyNumberVariation, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel
Version 1.70.0
In Bioconductor since BioC 1.9 (R-2.4) (18 years)
License GPL-2
Depends methods, Biobase(>= 2.14), quantsmooth
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Suggests aCGH, affy, limma, snapCGH, beadarray, DNAcopy
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