alabaster.base
Save Bioconductor Objects To File
Bioconductor version: Release (3.20)
Save Bioconductor data structures into file artifacts, and load them back into memory. This is a more robust and portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("alabaster.base")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.base")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("alabaster.base")
Saving and loading artifacts | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataImport, DataRepresentation, Software |
Version | 1.6.0 |
In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
License | MIT + file LICENSE |
Depends | |
Imports | alabaster.schemas, methods, utils, S4Vectors, rhdf5(>= 2.47.6), jsonlite, jsonvalidate, Rcpp |
System Requirements | C++17, GNU make |
URL | https://github.com/ArtifactDB/alabaster.base |
Bug Reports | https://github.com/ArtifactDB/alabaster.base/issues |
See More
Suggests | BiocStyle, rmarkdown, knitr, testthat, digest, Matrix, alabaster.matrix |
Linking To | Rcpp, Rhdf5lib |
Enhances | |
Depends On Me | alabaster, alabaster.bumpy, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.sce, alabaster.se, alabaster.spatial, alabaster.string, alabaster.vcf |
Imports Me | celldex, scRNAseq |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | alabaster.base_1.6.0.tar.gz |
Windows Binary (x86_64) | alabaster.base_1.6.0.zip |
macOS Binary (x86_64) | alabaster.base_1.6.0.tgz |
macOS Binary (arm64) | alabaster.base_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/alabaster.base |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/alabaster.base |
Bioc Package Browser | https://code.bioconductor.org/browse/alabaster.base/ |
Package Short Url | https://bioconductor.org/packages/alabaster.base/ |
Package Downloads Report | Download Stats |