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SANTA

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SANTA.

Spatial Analysis of Network Associations


Bioconductor version: Release (3.18)

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Author: Alex Cornish [cre, aut]

Maintainer: Alex Cornish <alex.cornish at icr.ac.uk>

Citation (from within R, enter citation("SANTA")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SANTA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SANTA")
Introduction to SANTA HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, Network, NetworkEnrichment, Software
Version 2.38.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License GPL (>= 2)
Depends R (>= 4.1), igraph
Imports graphics, Matrix, methods, stats
System Requirements
URL
Bug Reports https://github.com/alexjcornish/SANTA
See More
Suggests BiocGenerics, BioNet, DLBCL, formatR, knitr, msm, org.Sc.sgd.db, markdown, rmarkdown, RUnit
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SANTA_2.38.0.tar.gz
Windows Binary SANTA_2.38.0.zip
macOS Binary (x86_64) SANTA_2.38.0.tgz
macOS Binary (arm64) SANTA_2.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SANTA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SANTA
Bioc Package Browser https://code.bioconductor.org/browse/SANTA/
Package Short Url https://bioconductor.org/packages/SANTA/
Package Downloads Report Download Stats