SAGx

DOI: 10.18129/B9.bioc.SAGx    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Statistical Analysis of the GeneChip

Bioconductor version: Release (3.13)

A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.

Author: Per Broberg

Maintainer: Per Broberg, <pi.broberg at gmail.com>

Citation (from within R, enter citation("SAGx")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SAGx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Clustering, DataImport, DifferentialExpression, GeneExpression, GeneSetEnrichment, KEGG, Microarray, MultipleComparison, OneChannel, Pathways, Preprocessing, Regression, Software
Version 1.66.0
In Bioconductor since BioC 1.9 (R-2.4) (15 years)
License GPL-3
Depends R (>= 2.5.0), stats, multtest, methods
Imports Biobase, stats4
LinkingTo
Suggests KEGG.db, hu6800.db, MASS
SystemRequirements
Enhances
URL http://home.swipnet.se/pibroberg/expression_hemsida1.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/SAGx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SAGx
Package Short Url https://bioconductor.org/packages/SAGx/
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