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R4RNA

An R package for RNA visualization and analysis


Bioconductor version: Release (3.18)

A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.

Author: Daniel Lai, Irmtraud Meyer <irmtraud.meyer at cantab.net>

Maintainer: Daniel Lai <jujubix at cs.ubc.ca>

Citation (from within R, enter citation("R4RNA")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("R4RNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("R4RNA")
R4RNA.pdf PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, DataImport, DataRepresentation, MultipleComparison, MultipleSequenceAlignment, Preprocessing, Software, Visualization
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-3
Depends R (>= 3.2.0), Biostrings(>= 2.38.0)
Imports
System Requirements
URL http://www.e-rna.org/r-chie/
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me ggmsa
Suggests Me rfaRm
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package R4RNA_1.30.0.tar.gz
Windows Binary R4RNA_1.30.0.zip (64-bit only)
macOS Binary (x86_64) R4RNA_1.30.0.tgz
macOS Binary (arm64) R4RNA_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/R4RNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/R4RNA
Bioc Package Browser https://code.bioconductor.org/browse/R4RNA/
Package Short Url https://bioconductor.org/packages/R4RNA/
Package Downloads Report Download Stats