PrInCE
Predicting Interactomes from Co-Elution
Bioconductor version: Release (3.19)
PrInCE (Predicting Interactomes from Co-Elution) uses a naive Bayes classifier trained on dataset-derived features to recover protein-protein interactions from co-elution chromatogram profiles. This package contains the R implementation of PrInCE.
Author: Michael Skinnider [aut, trl, cre], R. Greg Stacey [ctb], Nichollas Scott [ctb], Anders Kristensen [ctb], Leonard Foster [aut, led]
Maintainer: Michael Skinnider <michael.skinnider at msl.ubc.ca>
citation("PrInCE")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PrInCE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PrInCE")
Interactome reconstruction from co-elution data with PrInCE | HTML | R Script |
Reference Manual | ||
LICENSE | Text |
Details
biocViews | NetworkInference, Proteomics, Software, SystemsBiology |
Version | 1.20.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
License | GPL-3 + file LICENSE |
Depends | R (>= 3.6.0) |
Imports | purrr (>= 0.2.4), dplyr (>= 0.7.4), tidyr (>= 0.8.99), forecast (>= 8.2), progress (>= 1.1.2), Hmisc (>= 4.0), naivebayes (>= 0.9.1), robustbase (>= 0.92-7), ranger (>= 0.8.0), LiblineaR (>= 2.10-8), speedglm (>= 0.3-2), tester (>= 0.1.7), magrittr (>= 1.5), Biobase(>= 2.40.0), MSnbase(>= 2.8.3), stats, utils, methods, Rdpack (>= 0.7) |
System Requirements | |
URL | |
Bug Reports | https://github.com/fosterlab/PrInCE/issues |
See More
Suggests | BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | PrInCE_1.20.0.tar.gz |
Windows Binary | PrInCE_1.20.0.zip |
macOS Binary (x86_64) | PrInCE_1.20.0.tgz |
macOS Binary (arm64) | PrInCE_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/PrInCE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PrInCE |
Bioc Package Browser | https://code.bioconductor.org/browse/PrInCE/ |
Package Short Url | https://bioconductor.org/packages/PrInCE/ |
Package Downloads Report | Download Stats |