Welcome to the new bioconductor.org!

MsBackendMassbank

Mass Spectrometry Data Backend for MassBank record Files


Bioconductor version: Release (3.18)

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

Author: RforMassSpectrometry Package Maintainer [cre], Michael Witting [aut] , Johannes Rainer [aut] , Michael Stravs [ctb]

Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>

Citation (from within R, enter citation("MsBackendMassbank")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMassbank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMassbank")
Description and usage of MsBackendMassbank HTML R Script
Reference Manual PDF

Details

biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Software
Version 1.10.1
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License Artistic-2.0
Depends R (>= 4.0), Spectra(>= 1.9.12)
Imports BiocParallel, S4Vectors, IRanges, methods, ProtGenerics, MsCoreUtils, DBI, utils
System Requirements
URL https://github.com/RforMassSpectrometry/MsBackendMassbank
Bug Reports https://github.com/RforMassSpectrometry/MsBackendMassbank/issues
See More
Suggests testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), RSQLite, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MsBackendMassbank_1.10.1.tar.gz
Windows Binary MsBackendMassbank_1.10.1.zip
macOS Binary (x86_64) MsBackendMassbank_1.10.1.tgz
macOS Binary (arm64) MsBackendMassbank_1.10.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MsBackendMassbank
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MsBackendMassbank
Bioc Package Browser https://code.bioconductor.org/browse/MsBackendMassbank/
Package Short Url https://bioconductor.org/packages/MsBackendMassbank/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive