MouseFM
In-silico methods for genetic finemapping in inbred mice
Bioconductor version: Release (3.19)
This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).
Author: Matthias Munz [aut, cre] , Inken Wohlers [aut] , Hauke Busch [aut]
Maintainer: Matthias Munz <matthias.munz at gmx.de>
Citation (from within R, enter
citation("MouseFM")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MouseFM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MouseFM")
Fetch | HTML | R Script |
Finemapping | HTML | R Script |
Prioritization | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation |
Version | 1.14.6 |
In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
License | GPL-3 |
Depends | R (>= 4.0.0) |
Imports | httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, GenomeInfoDb, methods, biomaRt, stats, IRanges |
System Requirements | |
URL | |
Bug Reports | https://github.com/matmu/MouseFM/issues |
See More
Suggests | BiocStyle, testthat, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MouseFM_1.14.6.tar.gz |
Windows Binary | MouseFM_1.14.6.zip |
macOS Binary (x86_64) | MouseFM_1.14.6.tgz |
macOS Binary (arm64) | MouseFM_1.14.6.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MouseFM |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MouseFM |
Bioc Package Browser | https://code.bioconductor.org/browse/MouseFM/ |
Package Short Url | https://bioconductor.org/packages/MouseFM/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |