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IsoCorrectoRGUI

Graphical User Interface for IsoCorrectoR


Bioconductor version: Release (3.18)

IsoCorrectoRGUI is a Graphical User Interface for the IsoCorrectoR package. IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O...), as well as high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously).

Author: Christian Kohler [cre, aut], Paul Kuerner [aut], Paul Heinrich [aut]

Maintainer: Christian Kohler <christian.kohler at ur.de>

Citation (from within R, enter citation("IsoCorrectoRGUI")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IsoCorrectoRGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IsoCorrectoRGUI")
IsoCorrectoR HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GUI, ImmunoOncology, MassSpectrometry, Metabolomics, Preprocessing, Software
Version 1.18.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3
Depends R (>= 3.6)
Imports IsoCorrectoR, readxl, tcltk2, tcltk, utils
System Requirements
URL https://genomics.ur.de/files/IsoCorrectoRGUI
See More
Suggests knitr, rmarkdown, testthat, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me IsoCorrectoR
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IsoCorrectoRGUI_1.18.0.tar.gz
Windows Binary IsoCorrectoRGUI_1.18.0.zip (64-bit only)
macOS Binary (x86_64) IsoCorrectoRGUI_1.18.0.tgz
macOS Binary (arm64) IsoCorrectoRGUI_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IsoCorrectoRGUI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IsoCorrectoRGUI
Bioc Package Browser https://code.bioconductor.org/browse/IsoCorrectoRGUI/
Package Short Url https://bioconductor.org/packages/IsoCorrectoRGUI/
Package Downloads Report Download Stats