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GOSim

Computation of functional similarities between GO terms and gene products; GO enrichment analysis


Bioconductor version: Release (3.18)

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

Citation (from within R, enter citation("GOSim")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GOSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOSim")
GOsim PDF R Script
Reference Manual PDF

Details

biocViews Clustering, GO, Pathways, Software
Version 1.40.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL (>= 2)
Depends GO.db, annotate
Imports org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp
System Requirements
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Suggests
Linking To Rcpp
Enhances igraph
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GOSim_1.40.0.tar.gz
Windows Binary GOSim_1.40.0.zip (64-bit only)
macOS Binary (x86_64) GOSim_1.40.0.tgz
macOS Binary (arm64) GOSim_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GOSim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOSim
Bioc Package Browser https://code.bioconductor.org/browse/GOSim/
Package Short Url https://bioconductor.org/packages/GOSim/
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