BSgenomeForge

DOI: 10.18129/B9.bioc.BSgenomeForge  

Forge BSgenome data packages

Bioconductor version: Release (3.18)

A set of tools to forge BSgenome data packages. Supersedes the old seed-based tools from the BSgenome software package. This package allows the user to create a BSgenome data package in one function call, simplifying the old seed-based process.

Author: Hervé Pagès [aut, cre], Atuhurira Kirabo Kakopo [aut], Emmanuel Chigozie Elendu [ctb], Prisca Chidimma Maduka [ctb]

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("BSgenomeForge")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenomeForge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BSgenomeForge")

 

HTML R Script How to use the BSgenomeForge package to forge a BSgenome data package
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Annotation, DataImport, DataRepresentation, Genetics, GenomeAnnotation, Infrastructure, SequenceMatching, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 3.17 (R-4.3) (0.5 years)
License Artistic-2.0
Depends R (>= 4.3.0), methods, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb(>= 1.33.17), Biostrings, BSgenome
Imports utils, stats, Biobase, rtracklayer
LinkingTo
Suggests GenomicRanges, GenomicFeatures, testthat, knitr, rmarkdown, BiocStyle, devtools
SystemRequirements
Enhances
URL https://bioconductor.org/packages/BSgenomeForge
BugReports https://github.com/Bioconductor/BSgenomeForge/issues
Depends On Me
Imports Me
Suggests Me BSgenome
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenomeForge_1.2.0.tar.gz
Windows Binary
macOS Binary (x86_64) BSgenomeForge_1.2.0.tgz
macOS Binary (arm64) BSgenomeForge_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BSgenomeForge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BSgenomeForge
Bioc Package Browser https://code.bioconductor.org/browse/BSgenomeForge/
Package Short Url https://bioconductor.org/packages/BSgenomeForge/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive

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