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Investigates Allele Specific Expression

Bioconductor version: Release (3.18)

Provides a framework for allelic specific expression investigation using RNA-seq data.

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>

Citation (from within R, enter citation("AllelicImbalance")):


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if (!require("BiocManager", quietly = TRUE))


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AllelicImbalance Vignette PDF R Script
Reference Manual PDF


biocViews Genetics, Infrastructure, Sequencing, Software
Version 1.40.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends R (>= 4.0.0), grid, GenomicRanges(>= 1.31.8), SummarizedExperiment(>= 0.2.0), GenomicAlignments(>= 1.15.6)
Imports methods, BiocGenerics, AnnotationDbi, BSgenome(>= 1.47.3), VariantAnnotation(>= 1.25.11), Biostrings(>= 2.47.6), S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), Rsamtools(>= 1.99.3), GenomicFeatures(>= 1.31.3), Gviz, lattice, latticeExtra, gridExtra, seqinr, GenomeInfoDb, nlme
System Requirements
URL https://github.com/pappewaio/AllelicImbalance
Bug Reports https://github.com/pappewaio/AllelicImbalance/issues
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Suggests testthat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh37, BiocStyle, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AllelicImbalance_1.40.0.tar.gz
Windows Binary AllelicImbalance_1.40.0.zip
macOS Binary (x86_64) AllelicImbalance_1.40.0.tgz
macOS Binary (arm64) AllelicImbalance_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AllelicImbalance
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AllelicImbalance
Bioc Package Browser https://code.bioconductor.org/browse/AllelicImbalance/
Package Short Url https://bioconductor.org/packages/AllelicImbalance/
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