DOI: 10.18129/B9.bioc.ccTutorial  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of ccTutorial; for the stable release version, see ccTutorial.

Data package for ChIP-chip tutorial

Bioconductor version: Development (3.18)

This is a data package that accompanies a ChIP-chip tutorial, which has been published in PLoS Computational Biology. The data and source code in this package allow the reader to completely reproduce the steps in the tutorial.

Author: Joern Toedling, Wolfgang Huber

Maintainer: Joern Toedling <joern.toedling at>

Citation (from within R, enter citation("ccTutorial")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script A tutorial on how to analyze ChIP-chip readouts using Bioconductor
PDF R Script Supplement to A tutorial on how to analyze ChIP-chip readouts using Bioconductor
PDF   Reference Manual


biocViews ChipOnChipData, ExperimentData, MicroarrayData, Mus_musculus_Data
Version 1.39.1
License Artistic-2.0
Depends R (>= 2.10), Ringo(>= 1.9.8), affy(>= 1.23.4), topGO(>= 1.13.1)
Imports Biobase
Suggests biomaRt, Biobase(>= 2.5.5), xtable
Depends On Me
Imports Me
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Follow Installation instructions to use this package in your R session.

Source Package ccTutorial_1.39.1.tar.gz
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