plethy

DOI: 10.18129/B9.bioc.plethy  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of plethy; for the stable release version, see plethy.

R framework for exploration and analysis of respirometry data

Bioconductor version: Development (3.19)

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Author: Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]

Maintainer: Daniel Bottomly <bottomly at ohsu.edu>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("plethy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews
Version	1.40.0
In Bioconductor since	BioC 2.13 (R-3.0) (10 years)
License	GPL-3
Depends	R (>= 3.1.0), methods, DBI (>= 0.5-1), RSQLite (>= 1.1), BiocGenerics, S4Vectors
Imports	Streamer, IRanges, reshape2, plyr, RColorBrewer, ggplot2, Biobase
LinkingTo
Suggests	RUnit, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/plethy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plethy
Package Short Url	https://bioconductor.org/packages/plethy/
Package Downloads Report	Download Stats