XCIR

DOI: 10.18129/B9.bioc.XCIR    

This is the development version of XCIR; for the stable release version, see XCIR.

XCI-inference

Bioconductor version: Development (3.15)

Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.

Author: Renan Sauteraud, Dajiang Liu

Maintainer: Renan Sauteraud <rxs575 at psu.edu>

Citation (from within R, enter citation("XCIR")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("XCIR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Coverage, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.9.0
In Bioconductor since BioC 3.10 (R-3.6) (2 years)
License GPL-2
Depends methods
Imports stats, utils, tools, data.table, Biostrings, IRanges, VariantAnnotation, seqminer, ggplot2, biomaRt, readxl, S4Vectors
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/SRenan/XCIR
BugReports https://github.com/SRenan/XCIR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/XCIR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XCIR
Package Short Url https://bioconductor.org/packages/XCIR/
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