DOI: 10.18129/B9.bioc.RNAprobR    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of RNAprobR; for the stable release version, see RNAprobR.

An R package for analysis of massive parallel sequencing based RNA structure probing data

Bioconductor version: Development (3.13)

This package facilitates analysis of Next Generation Sequencing data for which positional information with a single nucleotide resolution is a key. It allows for applying different types of relevant normalizations, data visualization and export in a table or UCSC compatible bedgraph file.

Author: Lukasz Jan Kielpinski <kielpinski at bio.ku.dk>, Nikos Sidiropoulos <nikos.sidiro at gmail.com>, Jeppe Vinther <jvinther at bio.ku.dk>

Maintainer: Nikos Sidiropoulos <nikos.sidiro at gmail.com>

Citation (from within R, enter citation("RNAprobR")):


To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews Coverage, GenomeAnnotation, Normalization, Sequencing, Software
Version 1.23.1
In Bioconductor since BioC 3.1 (R-3.2) (6 years)
License GPL (>=2)
Depends R (>= 3.1.1), GenomicFeatures(>= 1.16.3), plyr (>= 1.8.1), BiocGenerics(>= 0.10.0)
Imports Biostrings(>= 2.32.1), GenomicRanges(>= 1.16.4), IRanges(>= 2.10.5), Rsamtools(>= 1.16.1), rtracklayer(>= 1.24.2), GenomicAlignments(>= 1.5.12), S4Vectors(>= 0.14.7), graphics, stats, utils
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Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/RNAprobR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAprobR
Package Short Url https://bioconductor.org/packages/RNAprobR/
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