ProteomicsAnnotationHubData

DOI: 10.18129/B9.bioc.ProteomicsAnnotationHubData    

This is the development version of ProteomicsAnnotationHubData; for the stable release version, see ProteomicsAnnotationHubData.

Transform public proteomics data resources into Bioconductor Data Structures

Bioconductor version: Development (3.15)

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

Author: Gatto Laurent [aut, cre], Sonali Arora [aut]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("ProteomicsAnnotationHubData")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ProteomicsAnnotationHubData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, Proteomics, Software
Version 1.25.0
In Bioconductor since BioC 3.2 (R-3.2) (6 years)
License Artistic-2.0
Depends AnnotationHub(>= 2.1.45), AnnotationHubData
Imports mzR(>= 2.3.2), MSnbase, Biostrings, GenomeInfoDb, utils, Biobase, BiocManager, RCurl
LinkingTo
Suggests knitr, BiocStyle, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/lgatto/ProteomicsAnnotationHubData
BugReports https://github.com/lgatto/ProteomicsAnnotationHubData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/ProteomicsAnnotationHubData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ProteomicsAnnotationHubData
Package Short Url https://bioconductor.org/packages/ProteomicsAnnotationHubData/
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