ExpressionView

DOI: 10.18129/B9.bioc.ExpressionView    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of ExpressionView; for the stable release version, see ExpressionView.

Visualize biclusters identified in gene expression data

Bioconductor version: Development (3.13)

ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Author: Andreas Luscher <andreas.luescher at a3.epfl.ch>

Maintainer: Gabor Csardi <csardi.gabor at gmail.com>

Citation (from within R, enter citation("ExpressionView")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ExpressionView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Classification, GO, GeneExpression, KEGG, Microarray, Software, Visualization
Version 1.43.1
In Bioconductor since BioC 2.6 (R-2.11) (11 years)
License GPL (>= 2)
Depends caTools, bitops, methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
Imports methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
LinkingTo
Suggests ALL, hgu95av2.db, biclust, affy
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/ExpressionView
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExpressionView
Package Short Url https://bioconductor.org/packages/ExpressionView/
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