BioNetStat

DOI: 10.18129/B9.bioc.BioNetStat    

This is the development version of BioNetStat; for the stable release version, see BioNetStat.

Biological Network Analysis

Bioconductor version: Development (3.14)

A package to perform differential network analysis, differential node analysis (differential coexpression analysis), network and metabolic pathways view.

Author: Vinícius Jardim, Suzana Santos, André Fujita, and Marcos Buckeridge

Maintainer: Vinicius Jardim <viniciusjc at gmail.com>

Citation (from within R, enter citation("BioNetStat")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BioNetStat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioNetStat")

 

HTML 1. Interface tutorial
HTML 2. R console tutorial
HTML 3. Tutorial para o console do R
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, ImmunoOncology, Metabolomics, Microarray, Network, NetworkInference, Pathways, Proteomics, RNASeq, Sequencing, Software, SystemsBiology
Version 1.13.0
In Bioconductor since BioC 3.7 (R-3.5) (3.5 years)
License GPL (>= 3)
Depends R (>= 4.0), shiny, igraph, shinyBS, pathview, DT
Imports BiocParallel, RJSONIO, whisker, yaml, pheatmap, ggplot2, plyr, utils, stats, RColorBrewer, Hmisc, psych, knitr, rmarkdown, markdown
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://github.com/jardimViniciusC/BioNetStat
BugReports http://github.com/jardimViniciusC/BioNetStat/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioNetStat_1.13.0.tar.gz
Windows Binary BioNetStat_1.13.0.zip
macOS 10.13 (High Sierra) BioNetStat_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BioNetStat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioNetStat
Package Short Url https://bioconductor.org/packages/BioNetStat/
Package Downloads Report Download Stats

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