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Standard styles for vignettes and other Bioconductor documents

Bioconductor version: Release (3.1)

Provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.

Author: Martin Morgan, Andrzej Oles, Wolfgang Huber

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("BiocStyle")):


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PDF R Script Bioconductor LaTeX Style
HTML R Script Bioconductor style for HTML documents
PDF   Reference Manual
Text   NEWS


biocViews Software
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (2 years)
License Artistic-2.0
Suggests knitr (>= 1.7), rmarkdown, BiocGenerics, RUnit
Depends On Me curatedBreastData
Imports Me Rqc
Suggests Me affycoretools, AnnotationDbi, AnnotationForge, AnnotationHub, arrayQualityMetrics, ASGSCA, bamsignals, BayesPeak, baySeq, beadarray, BeadDataPackR, bioassayR, BiocParallel, BitSeq, blima, blimaTestingData, BrowserViz, BrowserVizDemo, BubbleTree, CAFE, CAnD, Cardinal, CardinalWorkflows, ccrepe, CexoR, ChemmineDrugs, ChemmineOB, ChemmineR, ChIPpeakAnno, ChIPQC, ChIPseeker, ClassifyR, cleaver, clipper, clusterProfiler, coMET, compcodeR, conumee, CopyhelpeR, CopywriteR, CoRegNet, COSMIC.67, cosmiq, cpvSNP, CRISPRseek, curatedBladderData, curatedCRCData, curatedOvarianData, dagLogo, DEGreport, DESeq2, DEXSeq, DiffBind, DmelSGI, DOSE, DSS, easyRNASeq, EBImage, EDASeq, eiR, EnrichmentBrowser, ensembldb, flowcatchR, flowMap, FlowSOM, fmcsR, FourCSeq, genefilter, GeneOverlap, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicInteractions, GenomicRanges, GenomicTuples, ggbio, ggtree, GOexpress, GoogleGenomics, GOSemSim, gQTLBase, gQTLstats, graphite, GreyListChIP, groHMM, GSAR, Gviz, HD2013SGI, HIBAG, Hiiragi2013, HiTC, hpar, HTSFilter, illuminaio, imageHTS, immunoClust, InPAS, IVAS, M3D, mAPKL, MatrixRider, MBASED, mdgsa, MEDIPS, messina, MethylAid, MethylAidData, MethylMix, missMethyl, mogsa, motifStack, mQTL.NMR, MSnbase, MSnID, mygene, mzR, NanoStringQCPro, NarrowPeaks, netbiov, nethet, nondetects, npGSEA, oligo, omicade4, OmicsMarkeR, OncoSimulR, PAA, parathyroidSE, paxtoolsr, Pbase, plethy, Polyfit, pRoloc, PROPER, proteoQC, PSEA, PWMEnrich, qcmetrics, qpgraph, quantro, QuasR, R3CPET, rain, Rcade, rcellminer, rcellminerData, RCyjs, ReactomePA, RefNet, regioneR, ReQON, RforProteomics, rfPred, RGSEA, rhdf5, Rhtslib, riboSeqR, RNAprobR, RnaSeqSampleSize, RnaSeqSampleSizeData, Rnits, rols, rpx, Rsamtools, RUVcorr, RUVSeq, sangerseqR, sapFinder, SCLCBam, segmentSeq, SeqArray, seqPattern, seqplots, SeqVarTools, SGSeq, shinyMethyl, ShortRead, SigCheck, SigFuge, simulatorZ, sincell, soGGi, SomaticCancerAlterations, specL, SSPA, STAN, STATegRa, sva, synapter, systemPipeR, TFBSTools, tigre, TPP, tracktables, trackViewer, TurboNorm, VariantAnnotation, VariantFiltering, zebrafishRNASeq
Build Report  

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Package Source BiocStyle_1.6.0.tar.gz
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Mac OS X 10.9 (Mavericks) BiocStyle_1.6.0.tgz
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