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Seamless navigation through combined results of set-based and network-based enrichment analysis

Bioconductor version: 3.0

The EnrichmentBrowser package implements essential functionality for the enrichment analysis of gene expression data. The analysis combines the advantages of set-based and network-based enrichment analysis in order to derive high-confidence gene sets and biological pathways that are differentially regulated in the expression data under investigation. In addition, the package facilitates the visualization and exploration of such sets and pathways.

Author: Ludwig Geistlinger

Maintainer: Ludwig Geistlinger <Ludwig.Geistlinger at>

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PDF R Script EnrichmentBrowser Manual
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, Network, NetworkEnrichment, Pathways, ReportWriting, Software, Visualization
Version 1.0.3
In Bioconductor since BioC 3.0 (R-3.1)
License Artistic-2.0
Depends R (>= 3.0.0), Biobase, KEGGgraph
Imports KEGGREST, MASS, RColorBrewer, Rgraphviz, SPIA, graph, limma, mixtools, neaGUI, qvalue, safe, stringr
Suggests ALL, BiocStyle, hgu95av2.db
Depends On Me
Imports Me
Suggests Me
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