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This page was generated on 2021-08-02 15:05:32 -0400 (Mon, 02 Aug 2021).

INSTALL results for topGO on tokay2

To the developers/maintainers of the topGO package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/topGO.git to
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raw results

Package 1937/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
topGO 2.44.0  (landing page)
Adrian Alexa
Snapshot Date: 2021-08-01 04:50:10 -0400 (Sun, 01 Aug 2021)
URL: https://git.bioconductor.org/packages/topGO
Branch: RELEASE_3_13
Last Commit: d907c12
Last Changed Date: 2021-05-19 11:38:47 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: topGO
Version: 2.44.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/topGO_2.44.0.tar.gz && rm -rf topGO.buildbin-libdir && mkdir topGO.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=topGO.buildbin-libdir topGO_2.44.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL topGO_2.44.0.zip && rm topGO_2.44.0.tar.gz topGO_2.44.0.zip
StartedAt: 2021-08-01 08:10:24 -0400 (Sun, 01 Aug 2021)
EndedAt: 2021-08-01 08:14:02 -0400 (Sun, 01 Aug 2021)
EllapsedTime: 218.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/topGO_2.44.0.tar.gz && rm -rf topGO.buildbin-libdir && mkdir topGO.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=topGO.buildbin-libdir topGO_2.44.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL topGO_2.44.0.zip && rm topGO_2.44.0.tar.gz topGO_2.44.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  424k  100  424k    0     0  2223k      0 --:--:-- --:--:-- --:--:-- 2232k

install for i386

* installing *source* package 'topGO' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'topGO'
    finding HTML links ... done
    GOTests                                 html  
    GOdata                                  html  
    annFUN                                  html  
    classicCount-class                      html  
REDIRECT:topic	 sigMembers<- -> classicCount-class.html [ FAIL ]
REDIRECT:topic	 sigMembers<-,classicCount-method -> classicCount-class.html [ FAIL ]
    classicExpr-class                       html  
REDIRECT:topic	 pType<- -> classicExpr-class.html [ FAIL ]
REDIRECT:topic	 allMembers<-,classicExpr-method -> classicExpr-class.html [ FAIL ]
REDIRECT:topic	 pType<-,classicExpr-method -> classicExpr-class.html [ FAIL ]
    classicScore-class                      html  
REDIRECT:topic	 score<- -> classicScore-class.html [ FAIL ]
REDIRECT:topic	 score<-,classicScore-method -> classicScore-class.html [ FAIL ]
    dagFunctions                            html  
    diagnosticMethods                       html  
    elimCount-class                         html  
REDIRECT:topic	 cutOff<- -> elimCount-class.html [ FAIL ]
REDIRECT:topic	 cutOff<-,elimCount-method -> elimCount-class.html [ FAIL ]
REDIRECT:topic	 elim<- -> elimCount-class.html [ FAIL ]
REDIRECT:topic	 elim<-,elimCount-method -> elimCount-class.html [ FAIL ]
REDIRECT:topic	 elim<-,weight01Count-method -> elimCount-class.html [ FAIL ]
REDIRECT:topic	 depth<- -> elimCount-class.html [ FAIL ]
REDIRECT:topic	 depth<-,leaCount-method -> elimCount-class.html [ FAIL ]
REDIRECT:topic	 sigMembers<-,elimCount-method -> elimCount-class.html [ FAIL ]
    elimExpr-class                          html  
REDIRECT:topic	 depth<-,leaExpr-method -> elimExpr-class.html [ FAIL ]
REDIRECT:topic	 cutOff<-,elimExpr-method -> elimExpr-class.html [ FAIL ]
REDIRECT:topic	 elim<-,weight01Expr-method -> elimExpr-class.html [ FAIL ]
    elimScore-class                         html  
REDIRECT:topic	 cutOff<-,elimScore-method -> elimScore-class.html [ FAIL ]
REDIRECT:topic	 elim<-,elimScore-method -> elimScore-class.html [ FAIL ]
REDIRECT:topic	 depth<-,leaScore-method -> elimScore-class.html [ FAIL ]
REDIRECT:topic	 score<-,elimScore-method -> elimScore-class.html [ FAIL ]
REDIRECT:topic	 elim<-,weight01Score-method -> elimScore-class.html [ FAIL ]
    geneList                                html  
    getPvalues                              html  
    getSigGroups                            html  
    groupGOTerms                            html  
    groupStats-class                        html  
REDIRECT:topic	 allMembers<- -> groupStats-class.html [ FAIL ]
REDIRECT:topic	 members<- -> groupStats-class.html [ FAIL ]
REDIRECT:topic	 Name<- -> groupStats-class.html [ FAIL ]
REDIRECT:topic	 allMembers<-,groupStats-method -> groupStats-class.html [ FAIL ]
REDIRECT:topic	 members<-,groupStats-method -> groupStats-class.html [ FAIL ]
REDIRECT:topic	 Name<-,groupStats-method -> groupStats-class.html [ FAIL ]
    inducedGraph                            html  
    parentChild-class                       html  
REDIRECT:topic	 allMembers<-,parentChild-method -> parentChild-class.html [ FAIL ]
REDIRECT:topic	 sigMembers<-,parentChild-method -> parentChild-class.html [ FAIL ]
REDIRECT:topic	 allMembers<-,pC-method -> parentChild-class.html [ FAIL ]
REDIRECT:topic	 sigMembers<-,pC-method -> parentChild-class.html [ FAIL ]
    printGraph-methods                      html  
    topGO-package                           html  
    topGOdata-class                         html  
REDIRECT:topic	 description<- -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 feasible<- -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 geneSelectionFun<- -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 graph<- -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 ontology<- -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 updateTerm<- -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 description<-,topGOdata,ANY-method -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 feasible<-,topGOdata-method -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 geneSelectionFun<-,topGOdata-method -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 graph<-,topGOdata-method -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 ontology<-,topGOdata-method -> topGOdata-class.html [ FAIL ]
REDIRECT:topic	 updateTerm<-,topGOdata,character-method -> topGOdata-class.html [ FAIL ]
    topGOresult-class                       html  
REDIRECT:topic	 description<-,topGOresult,ANY-method -> topGOresult-class.html [ FAIL ]
REDIRECT:topic	 score<-,topGOresult-method -> topGOresult-class.html [ FAIL ]
REDIRECT:topic	 testName<- -> topGOresult-class.html [ FAIL ]
REDIRECT:topic	 testName<-,topGOresult-method -> topGOresult-class.html [ FAIL ]
REDIRECT:topic	 algorithm<- -> topGOresult-class.html [ FAIL ]
REDIRECT:topic	 algorithm<-,topGOresult-method -> topGOresult-class.html [ FAIL ]
REDIRECT:topic	 geneData<- -> topGOresult-class.html [ FAIL ]
REDIRECT:topic	 geneData<-,topGOresult-method -> topGOresult-class.html [ FAIL ]
    weightCount-class                       html  
REDIRECT:topic	 sigRatio<- -> weightCount-class.html [ FAIL ]
REDIRECT:topic	 Weights<- -> weightCount-class.html [ FAIL ]
REDIRECT:topic	 Weights<-,weightCount-method -> weightCount-class.html [ FAIL ]
REDIRECT:topic	 sigRatio<-,weightCount-method -> weightCount-class.html [ FAIL ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package can be loaded from final location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'topGO' ...
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'topGO' as topGO_2.44.0.zip
* DONE (topGO)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'topGO' successfully unpacked and MD5 sums checked