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This page was generated on 2021-09-17 15:06:16 -0400 (Fri, 17 Sep 2021).

INSTALL results for peakPantheR on tokay2

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raw results

Package 1366/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
peakPantheR 1.6.1  (landing page)
Arnaud Wolfer
Snapshot Date: 2021-09-16 04:50:11 -0400 (Thu, 16 Sep 2021)
git_url: https://git.bioconductor.org/packages/peakPantheR
git_branch: RELEASE_3_13
git_last_commit: 3308eac
git_last_commit_date: 2021-06-23 16:02:41 -0400 (Wed, 23 Jun 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: peakPantheR
Version: 1.6.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/peakPantheR_1.6.1.tar.gz && rm -rf peakPantheR.buildbin-libdir && mkdir peakPantheR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=peakPantheR.buildbin-libdir peakPantheR_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL peakPantheR_1.6.1.zip && rm peakPantheR_1.6.1.tar.gz peakPantheR_1.6.1.zip
StartedAt: 2021-09-16 08:27:55 -0400 (Thu, 16 Sep 2021)
EndedAt: 2021-09-16 08:29:03 -0400 (Thu, 16 Sep 2021)
EllapsedTime: 67.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/peakPantheR_1.6.1.tar.gz && rm -rf peakPantheR.buildbin-libdir && mkdir peakPantheR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=peakPantheR.buildbin-libdir peakPantheR_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL peakPantheR_1.6.1.zip && rm peakPantheR_1.6.1.tar.gz peakPantheR_1.6.1.zip
###
##############################################################################
##############################################################################


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 58 1763k   58 1024k    0     0  1832k      0 --:--:-- --:--:-- --:--:-- 1832k
100 1763k  100 1763k    0     0  2159k      0 --:--:-- --:--:-- --:--:-- 2158k

install for i386

* installing *source* package 'peakPantheR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'peakPantheR'
    finding HTML links ... done
    EICs-peakPantheRAnnotation-method       html  
    FIR-peakPantheRAnnotation-method        html  
    ROI-peakPantheRAnnotation-method        html  
    TIC-peakPantheRAnnotation-method        html  
    acquisitionTime-peakPantheRAnnotation-method
                                            html  
    annotationDiagnosticMultiplot           html  
    annotationDiagnosticPlots-peakPantheRAnnotation-method
                                            html  
    annotationParamsDiagnostic-peakPantheRAnnotation-method
                                            html  
    annotationTable-peakPantheRAnnotation-method
                                            html  
    annotation_diagnostic_multiplot_UI_helper
                                            html  
    annotation_fit_summary_UI_helper        html  
    annotation_showMethod_UI_helper         html  
    annotation_showText_UI_helper           html  
    cpdID-peakPantheRAnnotation-method      html  
    cpdMetadata-peakPantheRAnnotation-method
                                            html  
    cpdName-peakPantheRAnnotation-method    html  
    dataPoints-peakPantheRAnnotation-method
                                            html  
    emgGaussian_guess                       html  
    emgGaussian_minpack.lm                  html  
    emgGaussian_minpack.lm_objectiveFun     html  
    extractSignalRawData                    html  
    filename-peakPantheRAnnotation-method   html  
    filepath-peakPantheRAnnotation-method   html  
    findTargetFeatures                      html  
    fitCurve                                html  
    gaussian_cerf                           html  
    gaussian_erf                            html  
    generateIonChromatogram                 html  
    getAcquisitionDatemzML                  html  
    getTargetFeatureStatistic               html  
    initialise_annotation_from_files_UI_helper
                                            html  
    integrateFIR                            html  
    is.peakPantheR_curveFit                 html  
    isAnnotated-peakPantheRAnnotation-method
                                            html  
    load_annotation_from_file_UI_helper     html  
    nbCompounds-peakPantheRAnnotation-method
                                            html  
    nbSamples-peakPantheRAnnotation-method
                                            html  
    outputAnnotationDiagnostic-peakPantheRAnnotation-method
                                            html  
    outputAnnotationFeatureMetadata_UI_helper
                                            html  
    outputAnnotationParamsCSV-peakPantheRAnnotation-method
                                            html  
    outputAnnotationResult-peakPantheRAnnotation-method
                                            html  
    outputAnnotationSpectraMetadata_UI_helper
                                            html  
    peakFit-peakPantheRAnnotation-method    html  
    peakPantheR                             html  
    peakPantheRAnnotation                   html  
    peakPantheR_ROIStatistics               html  
    peakPantheR_applyRTCorrection           html  
    peakPantheR_loadAnnotationParamsCSV     html  
    peakPantheR_parallelAnnotation          html  
    peakPantheR_plotEICFit                  html  
    peakPantheR_plotPeakwidth               html  
    peakPantheR_singleFileSearch            html  
    peakPantheR_start_GUI                   html  
    peakTables-peakPantheRAnnotation-method
                                            html  
    plotEICDetectedPeakwidth                html  
    plotHistogram                           html  
    predictCurve                            html  
    prepare_advanced_target_parameters      html  
    prepare_basic_target_parameters         html  
    resetAnnotation-peakPantheRAnnotation-method
                                            html  
    resetFIR-peakPantheRAnnotation-method   html  
    retentionTimeCorrection-peakPantheRAnnotation-method
                                            html  
    saveSingleFileMultiEIC                  html  
    skewedGaussian_guess                    html  
    skewedGaussian_minpack.lm               html  
    skewedGaussian_minpack.lm_objectiveFun
                                            html  
    spectraMetadata-peakPantheRAnnotation-method
                                            html  
    spectraPaths_and_metadata_UI_helper     html  
    spectra_metadata_colourScheme_UI_helper
                                            html  
    sub-peakPantheRAnnotation-ANY-ANY-ANY-method
                                            html  
    uROI-peakPantheRAnnotation-method       html  
    uROIExist-peakPantheRAnnotation-method
                                            html  
    useFIR-peakPantheRAnnotation-method     html  
    useUROI-peakPantheRAnnotation-method    html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'peakPantheR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'peakPantheR' as peakPantheR_1.6.1.zip
* DONE (peakPantheR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'peakPantheR' successfully unpacked and MD5 sums checked