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This page was generated on 2021-09-24 15:06:19 -0400 (Fri, 24 Sep 2021).

CHECK results for omicRexposome on tokay2

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raw results

Package 1299/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
omicRexposome 1.14.0  (landing page)
Xavier EscribĂ  Montagut
Snapshot Date: 2021-09-23 04:50:12 -0400 (Thu, 23 Sep 2021)
git_url: https://git.bioconductor.org/packages/omicRexposome
git_branch: RELEASE_3_13
git_last_commit: f490520
git_last_commit_date: 2021-05-19 12:30:50 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: omicRexposome
Version: 1.14.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:omicRexposome.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings omicRexposome_1.14.0.tar.gz
StartedAt: 2021-09-24 01:58:59 -0400 (Fri, 24 Sep 2021)
EndedAt: 2021-09-24 02:07:07 -0400 (Fri, 24 Sep 2021)
EllapsedTime: 487.8 seconds
RetCode: 0
Status:   OK  
CheckDir: omicRexposome.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:omicRexposome.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings omicRexposome_1.14.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/omicRexposome.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'omicRexposome/DESCRIPTION' ... OK
* this is package 'omicRexposome' version '1.14.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'omicRexposome' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
association-methods  8.7   0.02    8.72
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
association-methods 10.66      0   10.65
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

omicRexposome.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/omicRexposome_1.14.0.tar.gz && rm -rf omicRexposome.buildbin-libdir && mkdir omicRexposome.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=omicRexposome.buildbin-libdir omicRexposome_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL omicRexposome_1.14.0.zip && rm omicRexposome_1.14.0.tar.gz omicRexposome_1.14.0.zip
###
##############################################################################
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  7 1356k    7 98575    0     0   500k      0  0:00:02 --:--:--  0:00:02  501k
 27 1356k   27  373k    0     0   319k      0  0:00:04  0:00:01  0:00:03  319k
100 1356k  100 1356k    0     0   709k      0  0:00:01  0:00:01 --:--:--  709k

install for i386

* installing *source* package 'omicRexposome' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'omicRexposome'
    finding HTML links ... done
    add_cls-methods                         html  
    finding level-2 HTML links ... done

    add_exp-methods                         html  
    asr                                     html  
    association-methods                     html  
    crossomics-methods                      html  
    crs                                     html  
    getIntegration-methods                  html  
    mds                                     html  
    omicRexposome                           html  
    plotAssociation-methods                 html  
    plotHits-methods                        html  
    plotIntegration-methods                 html  
    plotLambda-methods                      html  
    snpToContinuous                         html  
    tableHits-methods                       html  
    tableLambda-methods                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'omicRexposome' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'omicRexposome' as omicRexposome_1.14.0.zip
* DONE (omicRexposome)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'omicRexposome' successfully unpacked and MD5 sums checked

Tests output


Example timings

omicRexposome.Rcheck/examples_i386/omicRexposome-Ex.timings

nameusersystemelapsed
add_cls-methods0.230.020.84
add_exp-methods0.060.011.16
asr0.030.000.03
association-methods8.700.028.72
crossomics-methods0.250.030.28
crs000
getIntegration-methods000
mds0.000.010.01
plotAssociation-methods0.280.070.35
plotHits-methods0.150.070.23
plotIntegration-methods0.490.110.60
plotLambda-methods0.140.000.14
tableHits-methods0.050.000.05
tableLambda-methods0.060.000.06

omicRexposome.Rcheck/examples_x64/omicRexposome-Ex.timings

nameusersystemelapsed
add_cls-methods0.140.000.14
add_exp-methods0.030.010.05
asr0.110.000.11
association-methods10.66 0.0010.65
crossomics-methods0.330.020.35
crs0.010.000.01
getIntegration-methods000
mds000
plotAssociation-methods0.330.020.35
plotHits-methods0.140.030.17
plotIntegration-methods0.530.060.59
plotLambda-methods0.170.020.19
tableHits-methods0.050.010.06
tableLambda-methods0.060.000.06