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This page was generated on 2021-09-20 15:04:55 -0400 (Mon, 20 Sep 2021).

CHECK results for omicRexposome on nebbiolo1

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/omicRexposome.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1299/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
omicRexposome 1.14.0  (landing page)
Xavier Escribà Montagut
Snapshot Date: 2021-09-19 04:50:10 -0400 (Sun, 19 Sep 2021)
git_url: https://git.bioconductor.org/packages/omicRexposome
git_branch: RELEASE_3_13
git_last_commit: f490520
git_last_commit_date: 2021-05-19 12:30:50 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: omicRexposome
Version: 1.14.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:omicRexposome.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings omicRexposome_1.14.0.tar.gz
StartedAt: 2021-09-19 10:48:53 -0400 (Sun, 19 Sep 2021)
EndedAt: 2021-09-19 10:52:34 -0400 (Sun, 19 Sep 2021)
EllapsedTime: 221.1 seconds
RetCode: 0
Status:   OK  
CheckDir: omicRexposome.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:omicRexposome.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings omicRexposome_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/omicRexposome.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘omicRexposome/DESCRIPTION’ ... OK
* this is package ‘omicRexposome’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘omicRexposome’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
association-methods 12.147  0.024   12.17
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

omicRexposome.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL omicRexposome
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘omicRexposome’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (omicRexposome)

Tests output


Example timings

omicRexposome.Rcheck/omicRexposome-Ex.timings

nameusersystemelapsed
add_cls-methods0.1540.0000.158
add_exp-methods0.9720.0611.035
asr0.0200.0000.019
association-methods12.147 0.02412.170
crossomics-methods0.2990.0030.303
crs0.0010.0020.003
getIntegration-methods0.0010.0010.002
mds0.0030.0040.007
plotAssociation-methods0.2820.0080.289
plotHits-methods0.1120.0400.151
plotIntegration-methods0.4500.0830.534
plotLambda-methods0.1600.0120.172
tableHits-methods0.0470.0040.052
tableLambda-methods0.0500.0040.053