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This page was generated on 2021-07-30 15:06:01 -0400 (Fri, 30 Jul 2021).

BUILD BIN results for netresponse on tokay2

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raw results

Package 1267/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
netresponse 1.52.0  (landing page)
Leo Lahti
Snapshot Date: 2021-07-29 04:50:02 -0400 (Thu, 29 Jul 2021)
URL: https://git.bioconductor.org/packages/netresponse
Branch: RELEASE_3_13
Last Commit: 1ecd688
Last Changed Date: 2021-05-19 11:46:24 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: netresponse
Version: 1.52.0
Command: rm -rf netresponse.buildbin-libdir && mkdir netresponse.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netresponse.buildbin-libdir netresponse_1.52.0.tar.gz
StartedAt: 2021-07-30 10:41:27 -0400 (Fri, 30 Jul 2021)
EndedAt: 2021-07-30 10:42:25 -0400 (Fri, 30 Jul 2021)
EllapsedTime: 58.0 seconds
RetCode: 0
Status:   OK  
PackageFile: netresponse_1.52.0.zip
PackageFileSize: 1.43 MiB

Command output

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###
### Running command:
###
###   rm -rf netresponse.buildbin-libdir && mkdir netresponse.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netresponse.buildbin-libdir netresponse_1.52.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'netresponse' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264:15: warning: unused variable 'prior_fields' [-Wunused-variable]
   const char *prior_fields[]={"Mumu","S2mu",
               ^~~~~~~~~~~~
netresponse.c: In function 'mLogLambda':
netresponse.c:713:3: warning: 'U_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       post_gamma, log_lambda, prior_alpha,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       U_p, U_hat,
       ~~~~~~~~~~~
       datalen, dim1, dim2, data1, data2,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       Ns, ncentroids, implicitnoisevar);
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:713:3: warning: 'KsiBeta' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'KsiAlpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'BetaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'AlphaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mutilde' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mubar' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'S2mu' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mumu' may be used uninitialized in this function [-Wmaybe-uninitialized]
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/netresponse.buildbin-libdir/00LOCK-netresponse/00new/netresponse/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'netresponse'
    finding HTML links ... done
    NetResponseModel-class                  html  
    P.S                                     html  
    P.Sr                                    html  
    P.r.s                                   html  
    P.rS                                    html  
    P.rs.joint                              html  
    P.rs.joint.individual                   html  
    P.s.individual                          html  
    P.s.r                                   html  
    PlotMixture                             html  
    PlotMixtureBivariate                    html  
    PlotMixtureMultivariate                 html  
    PlotMixtureUnivariate                   html  
    add.ellipse                             html  
    bic.mixture                             html  
    bic.mixture.multivariate                html  
    bic.mixture.univariate                  html  
    bic.select.best.mode                    html  
    centerData                              html  
    check.matrix                            html  
    check.network                           html  
    continuous.responses                    html  
    detect.responses                        html  
    dna                                     html  
    enrichment.list.factor                  html  
    enrichment.list.factor.minimal          html  
    factor.responses                        html  
    factor.responses.minimal                html  
    filter.netw                             html  
    filter.network                          html  
    find.similar.features                   html  
    generate.toydata                        html  
    get.dat-NetResponseModel-method         html  
    get.mis                                 html  
    get.model.parameters                    html  
    get.subnets-NetResponseModel-method     html  
    getqofz-NetResponseModel-method         html  
    independent.models                      html  
    list.responses.continuous.multi         html  
    list.responses.continuous.single        html  
    list.responses.factor                   html  
    list.responses.factor.minimal           html  
    list.significant.responses              html  
    listify.groupings                       html  
    mixture.model                           html  
    model.stats                             html  
    netresponse-package                     html  
    order.responses                         html  
    osmo                                    html  
    pick.model.pairs                        html  
    pick.model.parameters                   html  
    plotPCA                                 html  
    plot_associations                       html  
    plot_data                               html  
    plot_expression                         html  
    plot_matrix                             html  
    plot_response                           html  
    plot_responses                          html  
    plot_scale                              html  
    plot_subnet                             html  
    read.sif                                html  
    remove.negative.edges                   html  
    response.enrichment                     html  
    response2sample                         html  
    sample2response                         html  
    set.breaks                              html  
    split.qofz                              html  
    toydata                                 html  
    update.model.pair                       html  
    vdp.mixt                                html  
    vectorize.groupings                     html  
    write.netresponse.results               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'netresponse' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264:15: warning: unused variable 'prior_fields' [-Wunused-variable]
   const char *prior_fields[]={"Mumu","S2mu",
               ^~~~~~~~~~~~
netresponse.c: In function 'mLogLambda':
netresponse.c:713:3: warning: 'U_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       post_gamma, log_lambda, prior_alpha,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       U_p, U_hat,
       ~~~~~~~~~~~
       datalen, dim1, dim2, data1, data2,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       Ns, ncentroids, implicitnoisevar);
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:713:3: warning: 'KsiBeta' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'KsiAlpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'BetaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'AlphaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mutilde' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mubar' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'S2mu' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mumu' may be used uninitialized in this function [-Wmaybe-uninitialized]
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/netresponse.buildbin-libdir/netresponse/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'netresponse' as netresponse_1.52.0.zip
* DONE (netresponse)