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This page was generated on 2021-09-17 15:06:11 -0400 (Fri, 17 Sep 2021).

CHECK results for martini on tokay2

To the developers/maintainers of the martini package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/martini.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1034/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
martini 1.12.0  (landing page)
Hector Climente-Gonzalez
Snapshot Date: 2021-09-16 04:50:11 -0400 (Thu, 16 Sep 2021)
git_url: https://git.bioconductor.org/packages/martini
git_branch: RELEASE_3_13
git_last_commit: 21f22dd
git_last_commit_date: 2021-06-29 09:35:34 -0400 (Tue, 29 Jun 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: martini
Version: 1.12.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:martini.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings martini_1.12.0.tar.gz
StartedAt: 2021-09-17 01:22:23 -0400 (Fri, 17 Sep 2021)
EndedAt: 2021-09-17 01:27:35 -0400 (Fri, 17 Sep 2021)
EllapsedTime: 312.7 seconds
RetCode: 0
Status:   OK  
CheckDir: martini.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:martini.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings martini_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'martini/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'martini' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'martini' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
get_GI_network: no visible binding for global variable 'gene1'
get_GI_network: no visible binding for global variable 'gene2'
get_GM_network: no visible binding for global variable 'gene'
group_snps: no visible binding for global variable '.'
Undefined global functions or variables:
  . gene gene1 gene2
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.13-bioc/R/library/martini/libs/i386/martini.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.13-bioc/R/library/martini/libs/x64/martini.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.Rcheck/00check.log'
for details.



Installation output

martini.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/martini_1.12.0.tar.gz && rm -rf martini.buildbin-libdir && mkdir martini.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=martini.buildbin-libdir martini_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL martini_1.12.0.zip && rm martini_1.12.0.tar.gz martini_1.12.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 85 2777k   85 2387k    0     0  2481k      0  0:00:01 --:--:--  0:00:01 2481k
100 2777k  100 2777k    0     0  2584k      0  0:00:01  0:00:01 --:--:-- 2586k

install for i386

* installing *source* package 'martini' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"c:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8:   required from 'struct Eigen::internal::traits<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34:   required from 'class Eigen::RefBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76:   required from 'class Eigen::Ref<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:694:17:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
../inst/include/martini_RcppExports.h:38:96:   recursively required by substitution of 'template<class T> SEXPREC* Rcpp::wrap(const Eigen::CholmodDecomposition<Eigen::SparseMatrix<Scalar> >&) [with T = <missing>]'
../inst/include/martini_RcppExports.h:38:96:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
../inst/include/martini_RcppExports.h:38:96:   recursively required by substitution of 'template<class T> SEXPREC* Rcpp::wrap(const Eigen::CholmodDecomposition<Eigen::SparseMatrix<Scalar> >&) [with T = <missing>]'
../inst/include/martini_RcppExports.h:38:96:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8:   required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20:   required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28:   required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>; Functor = Eigen::internal::assign_op<double, double>; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>; Func = Eigen::internal::assign_op<double, double>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37:   required from 'Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Derived&) [with Derived = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
RcppExports.cpp:57:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39:   required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
../inst/include/martini_RcppExports.h:38:66:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = int]':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from 'static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:119:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39:   required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
../inst/include/martini_RcppExports.h:38:66:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"c:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mincut.cpp -o mincut.o
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8:   required from 'struct Eigen::internal::traits<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34:   required from 'class Eigen::RefBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76:   required from 'class Eigen::Ref<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:694:17:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, 1>'
mincut.cpp:41:12:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, 1>'
mincut.cpp:41:12:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/EigenBase.h:41:59:   required from 'struct Eigen::EigenBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:26:34:   required from 'class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from 'class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >'
mincut.cpp:77:33:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
mincut.cpp:77:37:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
mincut.cpp:77:37:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:39:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >'
mincut.cpp:81:53:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:39:43:   required from 'struct Eigen::internal::traits<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >'
mincut.cpp:83:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = int]'
mincut.cpp:29:51:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8:   required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:495:54:   required from 'struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:345:8:   required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:103:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:131:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:465:11:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:535:54:   required from 'struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:345:8:   required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:103:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<double, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h:170:1:   required from 'const RCmpLTReturnType Eigen::ArrayBase<Derived>::operator>(const Scalar&) const [with Derived = Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >; Eigen::ArrayBase<Derived>::RCmpLTReturnType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Array<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double; Eigen::ArrayBase<Derived>::Scalar = double]'
mincut.cpp:81:39:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12:   required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:685:15:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30:   required from 'Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::DenseBase<Derived>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10:   required from 'Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:5:   required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:685:15:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = int]':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from 'static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = int]'
mincut.cpp:29:51:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"c:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c lib/maxflow/maxflow.cpp -o lib/maxflow/maxflow.o
"C:/rtools40/mingw32/bin/"ar crs libmaxflow.a lib/maxflow/maxflow.o
cp -r lib/maxflow "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/include"
mkdir -p "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/usrlib/i386"
cp libmaxflow.a "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/usrlib/i386"
C:\rtools40\mingw32\bin\nm.exe: 'libs': No such file
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o mincut.o -pthread -fopenmp C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/usrlib/i386/libmaxflow.a -lws2_32 -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'martini'
    finding HTML links ... done
    arrange_covars                          html  
    calculateE                              html  
    calculateG                              html  
    check_installed                         html  
    connect_biomart                         html  
    get_GI_network                          html  
    get_GM_network                          html  
    get_GS_network                          html  
    get_adjacency                           html  
    get_grid                                html  
    get_gxg                                 html  
    get_gxg_biogrid                         html  
    get_gxg_string                          html  
    get_snp_modules                         html  
    group_snps                              html  
    gwas2bed                                html  
    is_coherent                             html  
    ldweight_edges                          html  
    maxflow                                 html  
    mget_gxg_biogrid                        html  
    mget_gxg_string                         html  
    mincut                                  html  
    mincut.cv                               html  
    mincut_c                                html  
    minigwas                                html  
    minippi                                 html  
    minisnpMapping                          html  
    organism_id2name                        html  
    permute_snpMatrix                       html  
    plot_ideogram                           html  
    sanitize_map                            html  
    sanitize_snpMapping                     html  
    scones                                  html  
    scones.cv                               html  
    scones.cv_                              html  
    scones_                                 html  
    score_fold                              html  
    search_cones                            html  
    sigmod                                  html  
    sigmod.cv                               html  
    sigmod.cv_                              html  
    sigmod_                                 html  
    simulate_causal_snps                    html  
    simulate_phenotype                      html  
    snp2ensembl                             html  
    snp_test                                html  
    subnet                                  html  
    subset_snpMatrix                        html  
    subvert                                 html  
    wrap_Xy                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'martini' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"C:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
../inst/include/martini_RcppExports.h:38:96:   recursively required by substitution of 'template<class T> SEXPREC* Rcpp::wrap(const Eigen::CholmodDecomposition<Eigen::SparseMatrix<Scalar> >&) [with T = <missing>]'
../inst/include/martini_RcppExports.h:38:96:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
../inst/include/martini_RcppExports.h:38:96:   recursively required by substitution of 'template<class T> SEXPREC* Rcpp::wrap(const Eigen::CholmodDecomposition<Eigen::SparseMatrix<Scalar> >&) [with T = <missing>]'
../inst/include/martini_RcppExports.h:38:96:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8:   required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20:   required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28:   required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>; Functor = Eigen::internal::assign_op<double, double>; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>; Func = Eigen::internal::assign_op<double, double>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37:   required from 'Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Derived&) [with Derived = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
RcppExports.cpp:57:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39:   required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
../inst/include/martini_RcppExports.h:38:66:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = long long int]':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from 'static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:119:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39:   required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
../inst/include/martini_RcppExports.h:38:66:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"C:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mincut.cpp -o mincut.o
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, 1>'
mincut.cpp:41:12:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, 1>'
mincut.cpp:41:12:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/EigenBase.h:41:59:   required from 'struct Eigen::EigenBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:26:34:   required from 'class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from 'class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >'
mincut.cpp:77:33:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
mincut.cpp:77:37:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
mincut.cpp:77:37:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:39:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >'
mincut.cpp:81:53:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:39:43:   required from 'struct Eigen::internal::traits<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >'
mincut.cpp:83:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
mincut.cpp:29:51:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8:   required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:495:54:   required from 'struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:345:8:   required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:103:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:131:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:465:11:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:535:54:   required from 'struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:345:8:   required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:103:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<double, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h:170:1:   required from 'const RCmpLTReturnType Eigen::ArrayBase<Derived>::operator>(const Scalar&) const [with Derived = Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >; Eigen::ArrayBase<Derived>::RCmpLTReturnType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Array<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double; Eigen::ArrayBase<Derived>::Scalar = double]'
mincut.cpp:81:39:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12:   required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:685:15:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30:   required from 'Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::DenseBase<Derived>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10:   required from 'Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:5:   required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:685:15:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = long long int]':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from 'static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
mincut.cpp:29:51:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"C:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c lib/maxflow/maxflow.cpp -o lib/maxflow/maxflow.o
"C:/rtools40/mingw64/bin/"ar crs libmaxflow.a lib/maxflow/maxflow.o
cp -r lib/maxflow "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/martini/include"
mkdir -p "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/martini/usrlib/x64"
cp libmaxflow.a "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/martini/usrlib/x64"
C:\rtools40\mingw64\bin\nm.exe: 'libs': No such file
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o mincut.o -pthread -fopenmp C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/martini/usrlib/x64/libmaxflow.a -lws2_32 -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/martini/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'martini' as martini_1.12.0.zip
* DONE (martini)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'martini' successfully unpacked and MD5 sums checked

Tests output

martini.Rcheck/tests_i386/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(martini)
> library(igraph)

Attaching package: 'igraph'

The following object is masked from 'package:testthat':

    compare

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

> 
> test_check("martini")
trying URL 'https://stringdb-static.org/download/protein.links.v11.0/9606.protein.links.v11.0.txt.gz'
Content type 'application/octet-stream' length 71241372 bytes (67.9 MB)
==================================================
downloaded 67.9 MB

== Skipped tests ===============================================================
* On Bioconductor (3)
* On Windows (4)

[ FAIL 0 | WARN 0 | SKIP 7 | PASS 222 ]
> 
> proc.time()
   user  system elapsed 
  78.25    4.29  100.42 

martini.Rcheck/tests_x64/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(martini)
> library(igraph)

Attaching package: 'igraph'

The following object is masked from 'package:testthat':

    compare

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

> 
> test_check("martini")
trying URL 'https://stringdb-static.org/download/protein.links.v11.0/9606.protein.links.v11.0.txt.gz'
Content type 'application/octet-stream' length 71241372 bytes (67.9 MB)
==================================================
downloaded 67.9 MB

== Skipped tests ===============================================================
* On Bioconductor (3)
* On Windows (4)

[ FAIL 0 | WARN 0 | SKIP 7 | PASS 222 ]
> 
> proc.time()
   user  system elapsed 
  81.76    3.03   99.06 

Example timings

martini.Rcheck/examples_i386/martini-Ex.timings

nameusersystemelapsed
check_installed000
get_GI_network0.030.020.05
get_GM_network0.020.000.02
get_GS_network000
get_grid000
get_gxg_biogrid000
get_gxg_string000
get_snp_modules000
is_coherent0.020.000.01
ldweight_edges0.040.000.05
mget_gxg_biogrid000
mget_gxg_string000
minigwas0.020.000.02
minippi000
minisnpMapping000
scones0.060.000.06
scones.cv0.110.010.12
scones.cv_0.080.000.08
scones_0.030.000.03
search_cones000
sigmod0.050.000.05
sigmod.cv0.110.000.11
sigmod.cv_0.070.000.08
sigmod_0.050.000.05
simulate_causal_snps0.030.000.03
simulate_phenotype0.030.000.03
subnet0.050.000.04
subvert0.030.000.04

martini.Rcheck/examples_x64/martini-Ex.timings

nameusersystemelapsed
check_installed000
get_GI_network0.040.000.05
get_GM_network0.010.000.02
get_GS_network000
get_grid000
get_gxg_biogrid000
get_gxg_string000
get_snp_modules000
is_coherent000
ldweight_edges0.050.000.05
mget_gxg_biogrid000
mget_gxg_string000
minigwas0.020.000.02
minippi0.000.020.01
minisnpMapping000
scones0.040.000.05
scones.cv0.140.000.14
scones.cv_0.080.000.08
scones_0.050.000.04
search_cones000
sigmod0.030.000.04
sigmod.cv0.130.000.12
sigmod.cv_0.070.000.08
sigmod_0.050.000.05
simulate_causal_snps0.050.000.04
simulate_phenotype0.030.000.03
subnet0.030.000.03
subvert0.030.000.04